View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_65 (Length: 271)
Name: NF20730_high_65
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_65 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 213108 - 213346
Alignment:
| Q |
15 |
tatgttcttaccgaaactagaaagccaaagcagccttgtcattctaacttagaaaggaaacacaagggctctgacctccagtcctattgatcagaagcat |
114 |
Q |
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| T |
213108 |
tatgttcttaccgaaactagaaagccaaagcagccttgtcattctaacttagaaaggaaacacaagggctctgacctccagtcctattgatcagaagctt |
213207 |
T |
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| Q |
115 |
gtctatttgaattattactttcaaatatttaagtaaactctgaattttcatatactaaagataattagatataaattacgtttttacattcagttttaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
213208 |
gtctatttgaattattactttcaaatatttaagtaaactctggattttcatatactaaagataattagatataaattacgtttttacattcagttttaag |
213307 |
T |
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| Q |
215 |
cttagtaaacaaaactgtagccaaattaaacccacattg |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
213308 |
cttagtaaacaaaactgtagccaaattaaacccacattg |
213346 |
T |
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