View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_71 (Length: 258)
Name: NF20730_high_71
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_71 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 48316428 - 48316680
Alignment:
| Q |
1 |
agtggcatgaatagaatagagcttacaactgaagaactttggtgaggcagataggtacctactttcatcttccagtcatattttatcgcatcttcatgga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48316428 |
agtggcatgaatagaatagagcttacaactgaagaactttggtgaggcagataggaacctactttcatcttccagtcatattttatcgcatcttcatgga |
48316527 |
T |
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| Q |
101 |
atcgtcttgcttgtatgtgcattactctccttgtcattactgcaaaaattgaaaaaagaaacgtgtctttactattttaattgctggtttggttatattg |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48316528 |
atcgtcttgcttgtatgtgcattactcttcttgtcattactgcaaaaattgaaaaaagaaacgtgtctttactattttaattgctggtttggttatattg |
48316627 |
T |
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| Q |
201 |
caaatagcaagggattcttcttgaggacaggaataaaaaagtatcttgaaact |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48316628 |
caaatagcaagggattcttcttgaggacaggaataaaaaagtatcttgaaact |
48316680 |
T |
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