View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_72 (Length: 256)
Name: NF20730_high_72
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_72 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 44069813 - 44069562
Alignment:
| Q |
1 |
cacagataaactatcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagcacacaaacttgtatca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44069813 |
cacaaataaactatcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagctcacaaacttgtatca |
44069714 |
T |
|
| Q |
101 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaagattgcttagagctttatgaggatacaatatatcaactcaaacgctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44069713 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaggattgtttagagctttatgaggatacaatatatcaactcaaacgctcaa |
44069614 |
T |
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| Q |
201 |
taaactcaaacaacataaatgacaaattaacttggcaaagtgcttccattac |
252 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44069613 |
taaactcaaacaacctaaatgacaaattaacttggcaaagtgcttccattac |
44069562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 44095062 - 44094811
Alignment:
| Q |
1 |
cacagataaactatcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagcacacaaacttgtatca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44095062 |
cacaaataaactatcaaccctagattcttcttcttccttccatgatattgtacttaaggttaccttggaccaagccattgaagcacacaaacttgtatca |
44094963 |
T |
|
| Q |
101 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaagattgcttagagctttatgaggatacaatatatcaactcaaacgctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44094962 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaggattgtttagagctttatgaggatacaatatatcaactcaaacgctcaa |
44094863 |
T |
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| Q |
201 |
taaactcaaacaacataaatgacaaattaacttggcaaagtgcttccattac |
252 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
44094862 |
taaactcaaacaacctaaatgataaattaacttggcaaagtgcttccattac |
44094811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 44085292 - 44085543
Alignment:
| Q |
1 |
cacagataaactatcaaccctagattcttcttcttccttccatgatattgcacttaaggttaccttggaccaagccattgaagcacacaaacttgtatca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44085292 |
cacaaataaactatcaaccctagattcttcttcttccttccatgatattgtacttaaggttaccttggaccaagccattgaagctcacaaacttgtatca |
44085391 |
T |
|
| Q |
101 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaagattgcttagagctttatgaggatacaatatatcaactcaaacgctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44085392 |
accatggaattaaataatttcaaagacaagcatgccaaatcagcatgggaggattgtttagagctttatgaggatacaatatatcaactcaaacgctcaa |
44085491 |
T |
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| Q |
201 |
taaactcaaacaacataaatgacaaattaacttggcaaagtgcttccattac |
252 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
44085492 |
taaactcaaacaacctaaatgataaattaacttggcaaagtgcttccattac |
44085543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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