View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_79 (Length: 250)
Name: NF20730_high_79
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_79 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 43155998 - 43155878
Alignment:
| Q |
13 |
aatatactattatttttgggaaatacctgattgtctacttgtggtcgagtttatctggcaaaatatattgtgttagtagagccaatttaatttatctccc |
112 |
Q |
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| T |
43155998 |
aatatactattatttttgggaaatacctgattctctacttgtggtcgagtttatctggcaaaatatattatgttagtagagtcaatttaatttatctccc |
43155899 |
T |
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| Q |
113 |
aaaattgctctttagaaatta |
133 |
Q |
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|||||| |||||||||||||| |
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| T |
43155898 |
aaaattactctttagaaatta |
43155878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 43155795 - 43155671
Alignment:
| Q |
128 |
aaattaagaggcaaaccatgaacagaagatcttagaaaaacacacatgtttaggcttattttagtttgcctaatagattgattagtg--aatacaatttg |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| | |
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| T |
43155795 |
aaattaagaggcaaaccatgaacagaagatcttagaaaaacacacatttttaggctaattttagtttgcctaatagattgattagtgaaaatacaattgg |
43155696 |
T |
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| Q |
226 |
gtagttacaatgagtttgctatttt |
250 |
Q |
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| T |
43155695 |
taagttacaatgagtttgctgtttt |
43155671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 23913349 - 23913426
Alignment:
| Q |
136 |
aggcaaaccatgaacagaaga-tcttagaaaaacacacatgtttaggcttattttagtttgcctaatagattgattagt |
213 |
Q |
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|||||||||||||||| |||| |||| |||| ||||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
23913349 |
aggcaaaccatgaacaaaagactcttggaaag-cacacatgtttaggcaagttttagtttgcttaatagattgaatagt |
23913426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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