View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_high_88 (Length: 245)
Name: NF20730_high_88
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_88 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 30727964 - 30728046
Alignment:
| Q |
148 |
ttgtacaaatattattaatgtttttgatatattaggt-aagttaaaacatatttaaaaaaggaaaagaactactagaagcatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30727964 |
ttgtacaaatattattaatgtttttgatatattaggtcaagttaaaaaatatttaaaaaaggaaaagaactactagaagcatg |
30728046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 30727824 - 30727885
Alignment:
| Q |
2 |
tgtacaaccatttttgaacaacgtttgaacaactctttctctcattcgatcattgtgttttt |
63 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| |||||||||| |||||||||||||||| |
|
|
| T |
30727824 |
tgtacaaccatttttgaacaacgtttggataactttttctctcatacgatcattgtgttttt |
30727885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University