View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_high_9 (Length: 596)
Name: NF20730_high_9
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 96; Significance: 9e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 355 - 549
Target Start/End: Complemental strand, 3744846 - 3744654
Alignment:
| Q |
355 |
ttattcaataataataactttaatattttga--------catatacaacaatgacatgtagtttgatgaaaaatagttaatatcagttaatatcaactgt |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3744846 |
ttattcaataataataactttaatattttgaatatttgacatatacaacaatgacatgtagtttgatgaaaaatagttaatatca----------actgt |
3744757 |
T |
|
| Q |
447 |
gacatccgtaaccattttctaagcagattttctaaagttcgaaaccaaacgtnnnnnnnnnnnnntacaatgggtagagagagagctatctatctattta |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3744756 |
gacatccgtaaccattttctaagcagattttctaaagtttgaaaccaaacgtaaaaaataaaaaatacaatgggtagagagagagctatctatctattta |
3744657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 3745065 - 3744891
Alignment:
| Q |
20 |
cctcttgctacccgaagaagccatatacggttgtgactctaaaccctaaaaccttaaacctaatgaatgcaata--tatagaaggctgatatatctgatt |
117 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
3745065 |
cctcttgctaccccaagaagccatattcagttgtgactctaaaccctaaaaccttaaacctaacgaatgcaatatatatagaaggctgatatatctgatt |
3744966 |
T |
|
| Q |
118 |
atnnnnnnnnnnnnnnnnnnnnnnngggctagtaacgagtgtttttgttttatgttatcttcgcatatctttctt |
192 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3744965 |
ataaaaaataaaaataaaaataaaagggctagtaacgagtgtttttgttttatgttatcttcgcatatctttctt |
3744891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 586
Target Start/End: Complemental strand, 3734450 - 3734407
Alignment:
| Q |
543 |
tttatatacaaacttgagctatatattctaagttctgatgatgt |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3734450 |
tttatatacaaacttgagctatatattctaagttatgatgatgt |
3734407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 3753681 - 3753645
Alignment:
| Q |
63 |
ccctaaaaccttaaacctaatgaatgcaatatataga |
99 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
3753681 |
ccctaaaatcttaaacctagtgaatgcaatatataga |
3753645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 23976449 - 23976514
Alignment:
| Q |
364 |
aataataactttaatattttgacatatacaacaatgacatgtagtttgatgaaaaatagttaatat |
429 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| | ||||||||||| ||| |||||||||||| |
|
|
| T |
23976449 |
aataatgactttcatattttgacatatacaacactaacatgtagtttagcgaataatagttaatat |
23976514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 410
Target Start/End: Complemental strand, 11372361 - 11372315
Alignment:
| Q |
364 |
aataataactttaatattttgacatatacaacaatgacatgtagttt |
410 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| | ||||||||||| |
|
|
| T |
11372361 |
aataatgacttttatattttgacatatacaacattaacatgtagttt |
11372315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University