View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_90 (Length: 243)
Name: NF20730_high_90
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_90 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 66 - 227
Target Start/End: Original strand, 2319461 - 2319622
Alignment:
| Q |
66 |
gctttgcaatagcttgaatgacatagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattattgttttttaattaatttttc |
165 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2319461 |
gctttgcaatagcttgaatgacacagatcttctcaaacaactctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttc |
2319560 |
T |
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| Q |
166 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaatcgatcttct |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2319561 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaatcgatcttct |
2319622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 1259554 - 1259402
Alignment:
| Q |
66 |
gctttgcaatagcttgaatgacatagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattattgttttttaattaatttttc |
165 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1259554 |
gctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttc |
1259455 |
T |
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| Q |
166 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1259454 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
1259402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 70 - 218
Target Start/End: Complemental strand, 37242838 - 37242690
Alignment:
| Q |
70 |
tgcaatagcttgaatgacatagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattattgttttttaattaatttttcatat |
169 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37242838 |
tgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttcatat |
37242739 |
T |
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| Q |
170 |
gatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37242738 |
gatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
37242690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 34873167 - 34873273
Alignment:
| Q |
68 |
tttgcaatagcttgaatgacatagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattattgttttttaattaatttttcat |
167 |
Q |
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||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34873167 |
tttgcaatagcttgaatgacacaggtcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttcat |
34873266 |
T |
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| Q |
168 |
atgattt |
174 |
Q |
| |
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|| |||| |
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| T |
34873267 |
ataattt |
34873273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 31235006 - 31234854
Alignment:
| Q |
66 |
gctttgcaatagcttgaatgacatagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattattgttttttaattaatttttc |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31235006 |
gctttgcaatagcttgaatgacatagatcttcttaaatagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttc |
31234907 |
T |
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| Q |
166 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
218 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31234906 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
31234854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 18246807 - 18246655
Alignment:
| Q |
66 |
gctttgcaatagcttgaatgacatagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattattgttttttaattaatttttc |
165 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
18246807 |
gctttgcaatagcttgaatgacacagatcttctcaaacagctctcattcatgaatctccgagcatcttctccaacattatagttttttaattaatttttc |
18246708 |
T |
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| Q |
166 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18246707 |
atatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
18246655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 16989431 - 16989582
Alignment:
| Q |
67 |
ctttgcaatagcttgaatgacatagatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattattgttttttaattaatttttca |
166 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
16989431 |
ctttgcaatagcttgaatgacacaaatcttctcaaacagctctcattcatgaatctccgagtatcttctccaacattatagttttttaattaatttttca |
16989530 |
T |
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| Q |
167 |
tatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16989531 |
tatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
16989582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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