View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_high_99 (Length: 237)

Name: NF20730_high_99
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_high_99
NF20730_high_99
[»] chr7 (11 HSPs)
chr7 (48-237)||(15425865-15426054)
chr7 (54-237)||(15513353-15513536)
chr7 (138-237)||(15423727-15423827)
chr7 (63-188)||(15452144-15452270)
chr7 (178-236)||(15452281-15452339)
chr7 (138-208)||(18376803-18376874)
chr7 (73-117)||(15429170-15429214)
chr7 (73-117)||(15487565-15487609)
chr7 (73-117)||(16942289-16942333)
chr7 (73-117)||(15448698-15448742)
chr7 (205-237)||(15533438-15533470)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 48 - 237
Target Start/End: Complemental strand, 15426054 - 15425865
Alignment:
Q  48 atagatggatgcaaaaatcaaacgtcaatcaagtaactgcatttaaaacgtcgttatgaagatgtaactttaagtaacnnnnnnnnnnnngagaatgaga 147  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||            ||||||||||    
T  15426054 atagatggatgcaaaaatcaaacgtcaatcaagtaactgcaattaaaatgtcgttatgaagatgtaactttaagtaacaaaaataaaaaagagaatgaga 15425955  T
Q  148 ggaaagaaatcatcaatgatgaaaacaccagtctttgatttcggataactcaagatgagagaaagaaataagatcattaggtaaattcct 237  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  15425954 ggaaagaaagcatcaatgatgaaaacaccagtctttgatttcggataactcaagatgagagaaagaaataagagcattaggtaacttcct 15425865  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 15513536 - 15513353
Alignment:
Q  54 ggatgcaaaaatcaaacgtcaatcaagtaactgcatttaaaacgtcgttatgaagatgtaactttaagtaacnnnnnnnnnnnngagaatgagaggaaag 153  Q
    |||||| |||||||||||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||             | ||||||||||||||    
T  15513536 ggatgccaaaatcaaacgtcaatcaagcaactgcatt-aaaacgtggttgtgaagatgtaactttaagtaataaaaataacaaagcgaatgagaggaaag 15513438  T
Q  154 aaatcatcaatgatgaaaacacca-gtctttgatttcggataactcaagatgagagaaagaaataagatcattaggtaaattcct 237  Q
    ||| |||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  15513437 aaagcatcaatgatgaaaacacgaagtctttgatttcggataacacaagatgagagaaagaaataagatcattaggtaacttcct 15513353  T

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Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 138 - 237
Target Start/End: Complemental strand, 15423827 - 15423727
Alignment:
Q  138 gagaatgagaggaaagaaatcatcaatgatgaaaacac-cagtctttgatttcggataactcaagatgagagaaagaaataagatcattaggtaaattcc 236  Q
    |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15423827 gagaataagaggaaagaaagcatcaatgatgaaaacacgcagtctttgatttcggataactcaagatgagagaaagaaataagatcattaggtaacttcc 15423728  T
Q  237 t 237  Q
    |    
T  15423727 t 15423727  T

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Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 188
Target Start/End: Original strand, 15452144 - 15452270
Alignment:
Q  63 aatcaaacgtcaatcaagtaactgcatttaaaacgtcgttatgaagatgtaactttaagtaacnnnnnnnnnnnngagaatgagaggaaagaaatcatca 162  Q
    |||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||            || |||||||||||||||| |||||    
T  15452144 aatcaaacgtcaatcaagcaactgcatttaaaacgatgttatgaagatgtaactttaagtaacaaaaataacaaagaaaatgagaggaaagaaagcatca 15452243  T
Q  163 atgatgaaaac-accagtctttgattt 188  Q
    ||||||||||| | |||||||||||||    
T  15452244 atgatgaaaacaagcagtctttgattt 15452270  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 15452281 - 15452339
Alignment:
Q  178 gtctttgatttcggataactcaagatgagagaaagaaataagatcattaggtaaattcc 236  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||| ||||    
T  15452281 gtctttgatttcggatgactcaagacgagagaaagaaataagaacattaggtaacttcc 15452339  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 18376874 - 18376803
Alignment:
Q  138 gagaatgagaggaaagaaatcatcaatgatgaaaacac-cagtctttgatttcggataactcaagatgagag 208  Q
    ||||||||||||||||||| ||||||||||||| |||| | |||||||||||| ||| |||||||| |||||    
T  18376874 gagaatgagaggaaagaaagcatcaatgatgaatacacgccgtctttgatttccgatgactcaagacgagag 18376803  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 15429170 - 15429214
Alignment:
Q  73 caatcaagtaactgcatttaaaacgtcgttatgaagatgtaactt 117  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||    
T  15429170 caatcaagaaactgcatttaaaacgtcgttgtgaagatgcaactt 15429214  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 15487565 - 15487609
Alignment:
Q  73 caatcaagtaactgcatttaaaacgtcgttatgaagatgtaactt 117  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||    
T  15487565 caatcaagaaactgcatttaaaacgtcgttgtgaagatgcaactt 15487609  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 16942289 - 16942333
Alignment:
Q  73 caatcaagtaactgcatttaaaacgtcgttatgaagatgtaactt 117  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||    
T  16942289 caatcaagaaactgcatttaaaacgtcgttgtgaagatgcaactt 16942333  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 15448698 - 15448742
Alignment:
Q  73 caatcaagtaactgcatttaaaacgtcgttatgaagatgtaactt 117  Q
    |||||| | ||||||||||||||||||||| |||||||| |||||    
T  15448698 caatcaggaaactgcatttaaaacgtcgttgtgaagatgcaactt 15448742  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 15533470 - 15533438
Alignment:
Q  205 agagaaagaaataagatcattaggtaaattcct 237  Q
    ||||||||||||||||||||||||||| |||||    
T  15533470 agagaaagaaataagatcattaggtaacttcct 15533438  T

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