View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_102 (Length: 234)
Name: NF20730_low_102
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_102 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 30116668 - 30116458
Alignment:
| Q |
24 |
tgtaaggaactctgtacctttcttagtgcttctaattccattgaaacctctttcattgttggtcttttcttaccattaagtctcaaacatctcattgcaa |
123 |
Q |
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| T |
30116668 |
tgtaaggaactctgtacctttcttagtgcttctaattccattgaaacctctttcattgttggtcttttcttaccattaagtctcaaacatctcattgcaa |
30116569 |
T |
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| Q |
124 |
gatttgcaatagctagaatgtcatctttccttgcttcattaaccaatgcgttatctaaaatttgaggaagttggttttccttcatcgctgaaatgaaatg |
223 |
Q |
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| T |
30116568 |
gatttgcaatagctagaatgtcatctttccttgcttcattaaccaatgcgttatctaaaatttgaggaagttggttttccttcatcactgaaatgaaatg |
30116469 |
T |
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| Q |
224 |
tgccgtcatat |
234 |
Q |
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| T |
30116468 |
tgccgtcatat |
30116458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 226
Target Start/End: Complemental strand, 30106571 - 30106375
Alignment:
| Q |
30 |
gaactctgtacctttcttagtgcttctaattccattgaaacctctttcattgttggtcttttcttaccattaagtctcaaacatctcattgcaagatttg |
129 |
Q |
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||||| ||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||||| |||||||||||| |||||| |||||||| ||| |
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| T |
30106571 |
gaactttgtgcctttcttagtgtttctaattctgctgaaacttctttcattgttggtcttttcttatgattaagtctcaagcatctccttgcaagacttg |
30106472 |
T |
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| Q |
130 |
caatagctagaatgtcatctttccttgcttcattaaccaatgcgttatctaaaatttgaggaagttggttttccttcatcgctgaaatgaaatgtgc |
226 |
Q |
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| T |
30106471 |
aaatggcaagaatggtgtctttccctgcttccttttgcagtctagcatctataatttgagaaacttggttctccttcatcactgaaatgaaatgtgc |
30106375 |
T |
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