View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_104 (Length: 231)
Name: NF20730_low_104
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_104 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 20592991 - 20592793
Alignment:
| Q |
19 |
gtaagttggttgaaatgatgaaaaaataagttcttgacaatttgtttttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20592991 |
gtaagttggttgaaatgatgaaaaaataagttcttgacaatttgtttttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattat |
20592892 |
T |
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| Q |
119 |
cagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacattggatttatagaggttccccatttttgtccttgcttcgtagaataat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20592891 |
cagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacactggatttatagaggttccccatttttgtccttgcttcgtagaataat |
20592793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 20593214 - 20593124
Alignment:
| Q |
89 |
catataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacattggatttat |
179 |
Q |
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| T |
20593214 |
catataacaatggaccaaattcatcattatcagctatcaaagtatatttgcgaacattaaagagtaggggagagaaaaacactagatttat |
20593124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 19030954 - 19031053
Alignment:
| Q |
88 |
acatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacattggatttatagaggttc |
187 |
Q |
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|||||| ||||| |||| ||||||| ||||||| |||||||||| ||||| || |||||| |||||||||| |||| ||||||| |||||||||||||| |
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| T |
19030954 |
acatattacaattaacctaattcattattatcatatatcaaagtaaatttgtga-aattaa-gagtaagggaaagaagaacattgaatttatagaggttc |
19031051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 18173662 - 18173783
Alignment:
| Q |
69 |
gaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaac |
168 |
Q |
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|||| ||||||||||| | ||||||||||| ||| |||||||||| | || ||||||||| ||||| || |||||||||| || ||| | | ||| |
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| T |
18173662 |
gaaattattcaatcacagagcatataacaatcaacttaattcatcatcaacataaatcaaagtaaatttgtgaaaattaaagagcaaaggaaaagagaac |
18173761 |
T |
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| Q |
169 |
attggatttatagaggttcccc |
190 |
Q |
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| T |
18173762 |
accggatttatagaggttcccc |
18173783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 19706828 - 19706938
Alignment:
| Q |
90 |
atataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacattggatttatagaggttccc |
189 |
Q |
| |
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|||||| ||| |||| ||||||||||||||| ||||||||| |||||| | |||||||||||| |||| |||| |||| | |||||||||||||||| |
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| T |
19706828 |
atataataattaacctaattcatcattatcatacatcaaagtaaatttgcaagaattaaagagtaggggaaagaagaacactagatttatagaggttcct |
19706927 |
T |
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| Q |
190 |
catttttgtcc |
200 |
Q |
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|||||| |||| |
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| T |
19706928 |
cattttcgtcc |
19706938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 5642807 - 5642939
Alignment:
| Q |
64 |
ttttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagaga |
163 |
Q |
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|||||||| ||||||||||| | |||||| |||| || ||||||||||||||||| |||||| || |||||| | | ||||||||||||| ||| |
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| T |
5642807 |
ttttagaatttattcaatcacaagtcatatagcaattaaacaaattcatcattatcatacatcaaaataaatttgcagaagtaaaagagtaagggaaaga |
5642906 |
T |
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| Q |
164 |
aaaacattggatttatagaggttccccattttt |
196 |
Q |
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| |||| ||||||||||||||||| ||||| |
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| T |
5642907 |
agaacaccaaatttatagaggttcccccttttt |
5642939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 5648659 - 5648791
Alignment:
| Q |
64 |
ttttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagaga |
163 |
Q |
| |
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|||||||| ||||||||||| | |||||| |||| || ||||||||||||||||| |||||| || |||||| | | ||||||||||||| ||| |
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| T |
5648659 |
ttttagaatttattcaatcacaagtcatatagcaattaaacaaattcatcattatcatacatcaaaataaatttgcagaagtaaaagagtaagggaaaga |
5648758 |
T |
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| Q |
164 |
aaaacattggatttatagaggttccccattttt |
196 |
Q |
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| |||| ||||||||||||||||| ||||| |
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| T |
5648759 |
agaacaccaaatttatagaggttcccccttttt |
5648791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 21212134 - 21211993
Alignment:
| Q |
48 |
gttcttgacaatttgtttttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataatta |
147 |
Q |
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||||||||| ||| | ||||| ||| ||| ||||||| || ||||| ||||| |||| ||| ||||| |||| |||||||||| |||||| ||||| |
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| T |
21212134 |
gttcttgacgattaggttttaaaaattatccaatcacaaagcatatgacaattaacctaatccatcaacatcatatatcaaagtaaatttgcagaaatta |
21212035 |
T |
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| Q |
148 |
aagagtaagggagagaaaaacattggatttatagaggttcccc |
190 |
Q |
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|||||||||| | || | |||| |||||||||||||||||||| |
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| T |
21212034 |
aagagtaaggaaaag-agaacactggatttatagaggttcccc |
21211993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 32643 - 32512
Alignment:
| Q |
74 |
tattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacattgg |
173 |
Q |
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||||||||||| || | |||||||| |||| |||| |||||||||| ||||| | | ||||| | | | ||||||||||||| |||| ||||||| |
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| T |
32643 |
tattcaatcacaaagcttataacaaataacctaattaatcattatcatatatcagaagaaatttgtggaattaaaagagtaagggaaagaagaacattga |
32544 |
T |
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| Q |
174 |
atttatagaggttccccatttttgtccttgct |
205 |
Q |
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||||||| |||||||||||||| |||||||| |
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| T |
32543 |
atttataaaggttccccattttcatccttgct |
32512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 24590880 - 24590760
Alignment:
| Q |
65 |
tttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaa |
164 |
Q |
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||||||| |||||||| || || ||||| |||| |||| ||||||||||||||| ||||||||| |||||| |||||||||||||| || |||| |
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| T |
24590880 |
tttagaatttattcaattacaaaggatatagcaattaacctaattcatcattatcatacatcaaagtaaatttgcagaaattaaagagtaagagaaagaa |
24590781 |
T |
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| Q |
165 |
aaacattggatttatagaggt |
185 |
Q |
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|| | | ||||| ||||||| |
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| T |
24590780 |
gaatagtagatttgtagaggt |
24590760 |
T |
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