View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_low_108 (Length: 222)
Name: NF20730_low_108
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_108 |
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| [»] scaffold0182 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 43942930 - 43942729
Alignment:
| Q |
1 |
taaaatgagtggaaaaaacagtaatagaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgcacaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
43942930 |
taaaatgagtggaaaaaacagtaatacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatttggtgcacaaaa |
43942831 |
T |
|
| Q |
101 |
tcacatatttatacacacaatgtttctcaatgacatgatagttaaaaacatgatataagattagaacgtttagatagcatggtagatgaaaagtgtagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
43942830 |
tcacatatttatacacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagaggaaaagtgtagaa |
43942731 |
T |
|
| Q |
201 |
ag |
202 |
Q |
| |
|
|| |
|
|
| T |
43942730 |
ag |
43942729 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 22074033 - 22073958
Alignment:
| Q |
31 |
attgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgcacaaaatcacat |
106 |
Q |
| |
|
|||||||||||| || ||||||||| ||||| ||||||||||||||||| ||||||||||||| |||||| |||| |
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|
| T |
22074033 |
attgaagatgaattatacaattgttgtttgaaagtggtgatgaacaaaacccaaaatttggtgcgcaaaattacat |
22073958 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 2501058 - 2501116
Alignment:
| Q |
144 |
aaaaacatgatataagattagaacgtttagatagcatggtagatgaaaagtgtagaaag |
202 |
Q |
| |
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|||||||||| ||||||||||||| ||| ||||||||||| || ||||| ||||||||| |
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|
| T |
2501058 |
aaaaacatgaaataagattagaacatttggatagcatggttgaggaaaaatgtagaaag |
2501116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5885007 - 5885208
Alignment:
| Q |
1 |
taaaatgagtggaaaaaacagtaatagaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgcacaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
5885007 |
taaaatgagtggaaaaaacagtaatacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatttggtgcacaaaa |
5885106 |
T |
|
| Q |
101 |
tcacatatttatacacacaatgtttctcaatgacatgatagttaaaaacatgatataagattagaacgtttagatagcatggtagatgaaaagtgtagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
5885107 |
tcacatatttatacacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagaggaaaagtgtagaa |
5885206 |
T |
|
| Q |
201 |
ag |
202 |
Q |
| |
|
|| |
|
|
| T |
5885207 |
ag |
5885208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 54946124 - 54946225
Alignment:
| Q |
101 |
tcacatatttatacacacaatgtttctcaatgacatgatagttaaaaacatgatataagattagaacgtttagatagcatggtagatgaaaagtgtagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
54946124 |
tcacatatttatacacacaatgtttctcaatgacacgatagtaaaaaacatgatataagattataacatttagatagcatggtagaggaaaagtgtagaa |
54946223 |
T |
|
| Q |
201 |
ag |
202 |
Q |
| |
|
|| |
|
|
| T |
54946224 |
ag |
54946225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 10753 - 10954
Alignment:
| Q |
1 |
taaaatgagtggaaaaaacagtaatagaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgcacaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10753 |
taaaatgagtggaaaaaacagtaagacaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaacccaaaatttggtgcacaaaa |
10852 |
T |
|
| Q |
101 |
tcacatatttatacacacaatgtttctcaatgacatgatagttaaaaacatgatataagattagaacgtttagatagcatggtagatgaaaagtgtagaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
10853 |
tcacatatttatatacacaatgtttctcaatgacatgatagtaaaaaacatgatataagattagaacatttagatagcatggtagaggaaaagtgtagaa |
10952 |
T |
|
| Q |
201 |
ag |
202 |
Q |
| |
|
|| |
|
|
| T |
10953 |
ag |
10954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 16856704 - 16856488
Alignment:
| Q |
1 |
taaaatgagtggaaaaaacagtaatagaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgc------ |
94 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
16856704 |
taaaatgagtggaaaaaaaagtaatacaatattgaagatgaactaaccaattgttgcttgaatgcggtgatgaacaaaacccaaaatttggtgcccaaaa |
16856605 |
T |
|
| Q |
95 |
--------acaaaatcacatatttatacacacaatgtttctcaatgacatgatagttaaaaacatgatataagattagaacgtttagatagcatggtaga |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
16856604 |
tttggtgcacaaaatcacatatttatacacacaatgtttctcaatgatgtgatagtaaaaaacatgatatgagattagaacatttagatagcatggtaga |
16856505 |
T |
|
| Q |
187 |
tgaaaagtgtagaaagt |
203 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
16856504 |
ggaaaagtgtagaaagt |
16856488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 26615904 - 26616004
Alignment:
| Q |
1 |
taaaatgagtggaaaaaacagtaatagaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgcacaaaa |
100 |
Q |
| |
|
||||||||||| ||| |||| ||||| || ||||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
26615904 |
taaaatgagtgaaaagaacaataatacaaaattgaagatgatctaaccaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaa |
26616003 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
26616004 |
t |
26616004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 26721832 - 26721932
Alignment:
| Q |
1 |
taaaatgagtggaaaaaacagtaatagaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgcacaaaa |
100 |
Q |
| |
|
||||||||||| ||| |||| ||||| || ||||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
26721832 |
taaaatgagtgaaaagaacaataatacaaaattgaagatgatctaaccaattgttaattgaatgtggtgacgaacaaaacccaaaatttggtgcccaaaa |
26721931 |
T |
|
| Q |
101 |
t |
101 |
Q |
| |
|
| |
|
|
| T |
26721932 |
t |
26721932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 47933322 - 47933423
Alignment:
| Q |
101 |
tcacatatttatacacacaatgtttctcaatgacatgatagttaaaaacatgatataagattagaacgtttagatagcatggtagatgaaaagtgtagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
47933322 |
tcacatatttatacacacaatgtttctcaatgacacgatagtaaaaaacatgatataagattataacatttagatagcatggtagaggaaaagtgtagaa |
47933421 |
T |
|
| Q |
201 |
ag |
202 |
Q |
| |
|
|| |
|
|
| T |
47933422 |
ag |
47933423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 51167421 - 51167531
Alignment:
| Q |
12 |
gaaaaaacagtaatagaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgcacaaaatcacatattta |
111 |
Q |
| |
|
||||||||| |||||||| |||||||| |||| | |||| |||||||| | |||||||||||||||| ||||||||| |||||||| |||| ||||| |
|
|
| T |
51167421 |
gaaaaaacaataatagaaaattgaagaggaacaattcaatagttgcttggaagtggtgatgaacaaaatccaaaatttgctgcacaaattcacgaattta |
51167520 |
T |
|
| Q |
112 |
tacacacaatg |
122 |
Q |
| |
|
||||||||||| |
|
|
| T |
51167521 |
tacacacaatg |
51167531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 27280853 - 27280953
Alignment:
| Q |
14 |
aaaaacagtaatagaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgcacaaaatcacatatttata |
113 |
Q |
| |
|
||||||| |||| || ||||||||||||||| |||||| ||||||||| ||||||||| |||||||||| || |||||||||||||||||||| |
|
|
| T |
27280853 |
aaaaacatcaatataaaattgaagatgaactatccaattattgcttgaaagtggtgatggacaaaactca-------gtacacaaaatcacatatttata |
27280945 |
T |
|
| Q |
114 |
cacacaat |
121 |
Q |
| |
|
| |||||| |
|
|
| T |
27280946 |
cgcacaat |
27280953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 653324 - 653423
Alignment:
| Q |
14 |
aaaaacagtaatagaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgcacaaaatcacatatttata |
113 |
Q |
| |
|
||||||| ||||| || || ||||||| | | |||||| ||||||||| || |||||||||||||| |||| ||||||||| ||||| ||||||||||| |
|
|
| T |
653324 |
aaaaacaataatacaaaatcgaagatgttccatccaattattgcttgaaagttgtgatgaacaaaacccaaactttggtgcaaaaaataacatatttata |
653423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 40072113 - 40072225
Alignment:
| Q |
20 |
agtaatagaatattgaagatgaactaaccaattgttgcttgaatgtggtgatgaacaaaactcaaaatttggtgcacaaaatcacatatttatacacaca |
119 |
Q |
| |
|
||||||| || |||||||||||| || |||||| ||||||||| | | ||| |||||||| |||||||||||| | ||| ||||| ||||||||||| |
|
|
| T |
40072113 |
agtaatacaaaattgaagatgaattatccaattattgcttgaaagggatgaacaacaaaacccaaaatttggtgaaagaaactacatacttatacacaca |
40072212 |
T |
|
| Q |
120 |
atgtttctcaatg |
132 |
Q |
| |
|
|| ||| |||||| |
|
|
| T |
40072213 |
atctttttcaatg |
40072225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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