View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_111 (Length: 216)
Name: NF20730_low_111
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_111 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 44069125 - 44069340
Alignment:
| Q |
1 |
ttaaatttgacactgtccttttgatatcaatattctctttataaacacctgctttcagatgaataaccactctcccttttccactaagcttagcagctgc |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44069125 |
ttaaatttgacactgtgcttttgatatcaatattctctttataaatacctgctttcagatgaataaccactctcccttttccactaagcttagcagctgc |
44069224 |
T |
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| Q |
101 |
agccacaccctcagatattgtcttatagttcccacttccatcttgtgcaaccacaatatcagctcttggtcctgtccctgaccccggtagtgcctgaaga |
200 |
Q |
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| T |
44069225 |
agccacaccctcagatattgtcttatagttcccacttccatcttgtgcaaccacaatatcagctcttggtcctgtccctgaccccggtgttgcctgaaga |
44069324 |
T |
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| Q |
201 |
agctttctatctgacc |
216 |
Q |
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|||||||||||||||| |
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| T |
44069325 |
agctttctatctgacc |
44069340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 44086077 - 44085862
Alignment:
| Q |
1 |
ttaaatttgacactgtccttttgatatcaatattctctttataaacacctgctttcagatgaataaccactctcccttttccactaagcttagcagctgc |
100 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44086077 |
ttaaatttgacattgtccttttgatatcgatattctctttataaacacctgctttcagatgaataaccactctccctttcccactaagcttagcagctgc |
44085978 |
T |
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| Q |
101 |
agccacaccctcagatattgtcttatagttcccacttccatcttgtgcaaccacaatatcagctcttggtcctgtccctgaccccggtagtgcctgaaga |
200 |
Q |
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| T |
44085977 |
agccacaccgtcagatattgtcttatagttcccacttccatcttgtgcaaccacaatatcagctcttggtcctgtccctgaacccggtgttgcctgaaga |
44085878 |
T |
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| Q |
201 |
agctttctatctgacc |
216 |
Q |
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|||||||||||||||| |
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| T |
44085877 |
agctttctatctgacc |
44085862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 44094384 - 44094589
Alignment:
| Q |
11 |
cactgtccttttgatatcaatattctctttataaacacctgctttcagatgaataaccactctcccttttccactaagcttagcagctgcagccacaccc |
110 |
Q |
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||||||| | |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44094384 |
cactgtcttcttgatatcaacattctctttataaatacctgctttcagatgaataaccactctcccttttccactaagcttagcagctgcagccacaccc |
44094483 |
T |
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| Q |
111 |
tcagatattgtcttatagttcccacttccatcttgtgcaaccacaatatcagctcttggtcctgtccctgaccccggtagtgcctgaagaagctttctat |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
44094484 |
tcagatattgtcttatagttcccacttccatcttgtgcaaccacaatatcagctcttggtcctatccctgaccccggtgttgcctgaagaagctttctat |
44094583 |
T |
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| Q |
211 |
ctgacc |
216 |
Q |
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|||||| |
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| T |
44094584 |
ctgacc |
44094589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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