View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_low_113 (Length: 209)
Name: NF20730_low_113
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_113 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Complemental strand, 23768233 - 23768058
Alignment:
| Q |
19 |
tgaagaagaaaagagggagtttagatttgatgtaaaaggcatagattggaaagattatatcactaatgttcatataccaggtctaaggagatatgtgatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23768233 |
tgaagaagaaaagagggagtttagatttgatgtaaaaggcatagattggaaagattatatcactaatgttcatataccaggtctaaggagatatgtgatg |
23768134 |
T |
|
| Q |
119 |
aagggaagaggaatgagcaatcagtgactcacatcttgtgtgtgatatgtaatcattagttgttagtagtcctatg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23768133 |
aagggaagaggaatgagcaatcagtgactcacatcatgtgtgtgatatgtaatcattagttgttagtagtcctatg |
23768058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University