View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_114 (Length: 207)

Name: NF20730_low_114
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_114
NF20730_low_114
[»] chr3 (2 HSPs)
chr3 (1-190)||(53731029-53731218)
chr3 (1-60)||(53726677-53726736)
[»] chr4 (2 HSPs)
chr4 (1-159)||(14059156-14059314)
chr4 (1-62)||(23544789-23544850)
[»] chr8 (3 HSPs)
chr8 (6-164)||(5659793-5659951)
chr8 (1-107)||(38643563-38643667)
chr8 (1-60)||(8263588-8263647)
[»] scaffold0427 (1 HSPs)
scaffold0427 (28-177)||(5896-6045)
[»] chr2 (4 HSPs)
chr2 (1-182)||(7504820-7505000)
chr2 (93-164)||(26973220-26973291)
chr2 (1-68)||(26973292-26973359)
chr2 (11-60)||(26968772-26968821)
[»] chr5 (1 HSPs)
chr5 (7-76)||(16087968-16088037)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 53731218 - 53731029
Alignment:
Q  1 tgctgtgttattacttaaagttgctgtgttgcagttgctgtttacacataaggtacaacaatcttggaatttatcctttataattgtgagcccaagttaa 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  53731218 tgctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataaggtacaacaatcttggaatttatcctttataattgtgaccgcaagttaa 53731119  T
Q  101 ggtttgggtgattggaaaattagtacagaccttctacaaggtacacaactttcattcaacaattgattttcaaaataaattgccgtaact 190  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  53731118 tgtttgggtgattggaaaattagtacagaccttctacaaggtacacaattttcattcaacaattgatttccaaaataaattgccgtaact 53731029  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 53726736 - 53726677
Alignment:
Q  1 tgctgtgttattacttaaagttgctgtgttgcagttgctgtttacacataaggtacaaca 60  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  53726736 tgctgtgttattacttaaagttgcggtgttgcggttgctgtttacacataaggtacaaca 53726677  T

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Target: chr4 (Bit Score: 119; Significance: 5e-61; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 14059156 - 14059314
Alignment:
Q  1 tgctgtgttattacttaaagttgctgtgttgcagttgctgtttacacataaggtacaacaatcttggaatttatcctttataattgtgagcccaagttaa 100  Q
    ||||| |||||||||||||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||    
T  14059156 tgctgcgttattacttaaagttgcggtgttgtggttgctgtttacacatcaggtacaacaatcttggaatttatcctttataactgtgaccgcaagttaa 14059255  T
Q  101 ggtttgggtgattggaaaattagtacagaccttctacaaggtacacaactttcattcaa 159  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  14059256 ggtttgggtgattggaaaattagtgcagaccttctacaaggtacagaactttcattcaa 14059314  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23544789 - 23544850
Alignment:
Q  1 tgctgtgttattacttaaagttgctgtgttgcagttgctgtttacacataaggtacaacaat 62  Q
    ||||| |||||||| ||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  23544789 tgctgcgttattacctaaagttgcggtgttgcggttgatgtttacacataaggtacaacaat 23544850  T

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Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 5659793 - 5659951
Alignment:
Q  6 tgttattacttaaagttgctgtgttgcagttgctgtttacacataaggtacaacaatcttggaatttatcctttataattgtgagcccaagttaaggttt 105  Q
    |||||||| || ||||||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||    
T  5659793 tgttattatttgaagttgcggtgttgcggttgctgtttacgcatcaggtacaacaatcttggaatttatcctttataactgtgaccgcaagttaaggttt 5659892  T
Q  106 gggtgattggaaaattagtacagaccttctacaaggtacacaactttcattcaacaatt 164  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  5659893 gggtgattggaaaattagtacagaccttctacaaggtacacgactttcattcaataatt 5659951  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 38643667 - 38643563
Alignment:
Q  1 tgctgtgttattacttaaagttgctgtgttgcagttgctgtttacacataaggtacaacaatcttggaatttatcc-tttataattgtgagcccaagtta 99  Q
    ||||| |||||||||||||||||| ||||||| ||||| |||||| |||   |||||||||||||||||||||||| |||| || ||||| | |||||||    
T  38643667 tgctgcgttattacttaaagttgcggtgttgcggttgcggtttacgcat---gtacaacaatcttggaatttatccttttaaaactgtgaccgcaagtta 38643571  T
Q  100 aggtttgg 107  Q
    || |||||    
T  38643570 agatttgg 38643563  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8263588 - 8263647
Alignment:
Q  1 tgctgtgttattacttaaagttgctgtgttgcagttgctgtttacacataaggtacaaca 60  Q
    ||||| ||||||||||||||||||  |||||| |||| ||||||||||| ||||||||||    
T  8263588 tgctgcgttattacttaaagttgcgatgttgcggttgttgtttacacatcaggtacaaca 8263647  T

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Target: scaffold0427 (Bit Score: 102; Significance: 7e-51; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 28 - 177
Target Start/End: Original strand, 5896 - 6045
Alignment:
Q  28 gttgcagttgctgtttacacataaggtacaacaatcttggaatttatcctttataattgtgagcccaagttaaggtttgggtgattggaaaattagtaca 127  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||| ||    
T  5896 gttgcggttgctgtttacacattaggtacaacaatcttggaatttatcctttataactgtgaccgcaagttaaggtttgggtgattggaaaattagtgca 5995  T
Q  128 gaccttctacaaggtacacaactttcattcaacaattgattttcaaaata 177  Q
    |||||||||| ||||||||| ||||||||||| |||| |||  |||||||    
T  5996 gaccttctacgaggtacacagctttcattcaataattaattgacaaaata 6045  T

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Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 7505000 - 7504820
Alignment:
Q  1 tgctgtgttattacttaaagttgctgtgttgcagttgctgtttacacataaggtacaacaatcttggaatttatcctttataattgtgagcccaagttaa 100  Q
    ||||| |||||||||||||||||| |||||   |||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| | ||| || |    
T  7505000 tgctgcgttattacttaaagttgcggtgttatggttgctgtttacacatcaggtacaacaatcttagaatttatcctttataaatgtgaccgcaaattta 7504901  T
Q  101 ggtttgggtgattggaaaattagtacagaccttctacaaggtacacaactttcattcaacaattgattttcaaaataaattg 182  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||||||| ||||||| |||| |||  |||| |||||||    
T  7504900 ggtttgagtgattggaaaattagtgca-accttctacaaggtacacaacttccattcaaaaattaattcacaaactaaattg 7504820  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 26973291 - 26973220
Alignment:
Q  93 caagttaaggtttgggtgattggaaaattagtacagaccttctacaaggtacacaactttcattcaacaatt 164  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  26973291 caagttaaggtttggctgattggaaaattagtgcagaccttctacaaggtacacaactttcattcaataatt 26973220  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 26973359 - 26973292
Alignment:
Q  1 tgctgtgttattacttaaagttgctgtgttgcagttgctgtttacacataaggtacaacaatcttgga 68  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||||| |||||||| |||||||||    
T  26973359 tgctgcgttattacttaaagttgcggtgttgcggttgctgtttacacatcaggtacaagaatcttgga 26973292  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 26968821 - 26968772
Alignment:
Q  11 ttacttaaagttgctgtgttgcagttgctgtttacacataaggtacaaca 60  Q
    |||||||||||||| ||||||| |||||||||||| ||| ||||||||||    
T  26968821 ttacttaaagttgcggtgttgcggttgctgtttactcatcaggtacaaca 26968772  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 16088037 - 16087968
Alignment:
Q  7 gttattacttaaagttgctgtgttgcagttgctgtttacacataaggtacaacaatcttggaatttatcc 76  Q
    ||||||| || ||||||| ||||||| ||| |||||||| ||| ||||||||||||||||||||||||||    
T  16088037 gttattatttgaagttgcggtgttgcggttactgtttacgcatcaggtacaacaatcttggaatttatcc 16087968  T

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