View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_12 (Length: 553)
Name: NF20730_low_12
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_12 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 284 - 534
Target Start/End: Complemental strand, 30892276 - 30892026
Alignment:
| Q |
284 |
ccagtaagaccaaggagttgaagcaagaaaggaaacaaagaagtgatgatcaaggtacatatccaatatgtaagtaaacaaattgaaatacatattcctc |
383 |
Q |
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| T |
30892276 |
ccagtaagaccaaggagttgaagcaagaaaggaaacaaagaagtgatgatcaaggtacatatccaatatgtaagtaaacaaattgaaatacatattcctc |
30892177 |
T |
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| Q |
384 |
gaacacttgttggaaatatttcagcagatatgatgtttggtatcacaccaaaacccatgcagaatatgctttcatatgtcacaacacatattgctgttat |
483 |
Q |
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| T |
30892176 |
gaacacttgttggaaatatttcagcagatatgatgtttggtatcacaccaaaacccatgcagaatatgctttcatatgttacaacacatattgctgttat |
30892077 |
T |
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| Q |
484 |
tgctgcattgaggattgaacttaggtgaaataagtctctgagtactagtat |
534 |
Q |
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| T |
30892076 |
tgctgcattgaggattgaacttaggtgaaataagtctttgagtactagtat |
30892026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 30892569 - 30892327
Alignment:
| Q |
9 |
gataattcttgtgttacgcaactatatagctatgaagtacggatacggacaccgacacaccgacgctgctaataatttgtcatgtcggtgtcggatggga |
108 |
Q |
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| T |
30892569 |
gataattcttgtgttacgcaactatatagctatgaagtacggatacagacactgacacaccgacgccgctaataatttgtcatgtcggtgtcggatggga |
30892470 |
T |
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| Q |
109 |
gacg-ttaatccgaggagtgtccgt-----------------accttttgctcagtcaatagtttcagctggttttgaaccaaaagcaaagaactcaatg |
190 |
Q |
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| T |
30892469 |
gacgtttaatccgaggagtgtccgtgcttgatagctgtactcaccttttgctcagtcaatagtttcagctggttttgaaccaaaagcaaagaactcaatg |
30892370 |
T |
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| Q |
191 |
ataacttctaaaggcatacctttagtttcaggaactttcaagt |
233 |
Q |
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| T |
30892369 |
ataacttctaaaggcatacctttagtttcaggaactttcaagt |
30892327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 9950012 - 9950086
Alignment:
| Q |
159 |
ctggttttgaaccaaaagcaaagaactcaatgataacttctaaaggcatacctttagtttcaggaactttcaagt |
233 |
Q |
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| T |
9950012 |
ctggctttgcaccaatagcaaaaaactcgataataacttccaaaggcataccctttgtttctggaactttcaagt |
9950086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 42893326 - 42893377
Alignment:
| Q |
36 |
agctatgaagtacggatacggacaccgacacaccgacgctgctaataatttg |
87 |
Q |
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| T |
42893326 |
agctatgaagcacggatatggacacggacacaccgacacagctaataatttg |
42893377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 456
Target Start/End: Original strand, 9950236 - 9950309
Alignment:
| Q |
383 |
cgaacacttgttggaaatatttcagcagatatgatgtttggtatcacaccaaaacccatgcagaatatgctttc |
456 |
Q |
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| T |
9950236 |
cgaacactggttgggaagatttctgcacatatgatgttgggaataacaccaagacccatgcagaagacgctttc |
9950309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 27084230 - 27084279
Alignment:
| Q |
38 |
ctatgaagtacggatacggacaccgacacaccgacgctgctaataatttg |
87 |
Q |
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| T |
27084230 |
ctatgaagcacggatacggacacggacactccgacactgctaataatttg |
27084279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 1705083 - 1705034
Alignment:
| Q |
38 |
ctatgaagtacggatacggacaccgacacaccgacgctgctaataatttg |
87 |
Q |
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| T |
1705083 |
ctatgaagcacggatacggacaccgacacaccgacacatctaataatttg |
1705034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 92775 - 92824
Alignment:
| Q |
38 |
ctatgaagtacggatacggacaccgacacaccgacgctgctaataatttg |
87 |
Q |
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| T |
92775 |
ctatgaagcacggatacggacactgacacgccgacaccgctaataatttg |
92824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 19147494 - 19147445
Alignment:
| Q |
38 |
ctatgaagtacggatacggacaccgacacaccgacgctgctaataatttg |
87 |
Q |
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| T |
19147494 |
ctatgaagcacggatacggacactgacacacggacacagctaataatttg |
19147445 |
T |
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