View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_13 (Length: 551)
Name: NF20730_low_13
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Original strand, 43091967 - 43092487
Alignment:
| Q |
13 |
aatatttgcagtgttaactttggtttcaaggttaacatcttcaccatcattttggactgtgaaatcatatttgttatggccttctgttgctaatgtgttc |
112 |
Q |
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| T |
43091967 |
aatatttgcagtgttaactttggtttcaaggttaacatcttcaccatcattttggactgtgaaatcatatttgttatggccttctgttgctaatgtgttc |
43092066 |
T |
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| Q |
113 |
attacaccattgtttgatttcaacatctgtaatgattggtaaactggaactccgtggtataaaaggagggaaaccttttgagagtctgttaggtttttgt |
212 |
Q |
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| T |
43092067 |
attacaccattgtttgatttcaacatctgtaatgattggtaaactggaactccgtggtataaaaggagggaaaccttttgagagtctgttaggtttttgt |
43092166 |
T |
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| Q |
213 |
actttgcagagaaaccgctgacggcggtatctgttggacagaaaacagttaaaccgccgtcaacggattctttgaaagtagggagtgcttttgaaacacg |
312 |
Q |
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| T |
43092167 |
actttgcagagaaaccgctgacggcggtatctgttggacagaaaacagttaaaccgccgtcaacggattctttgaaagtagggagtgcttttgaaacacg |
43092266 |
T |
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| Q |
313 |
taacaaatctgcgaaagactgacaaccttgttttgacataattccgattaaatcaatgtcacttggagctgctgtcggcgcttctgcgtcggcggagctt |
412 |
Q |
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| T |
43092267 |
taacaaatctgcgaaagactgacaaccttgttttgacataattccgattaaatcaatgtcacttggagctgccgtcggcgcttctgcgtcggcggagctt |
43092366 |
T |
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| Q |
413 |
aaaggattactgatttggagaacggagatgacatatggaagttcttctacggattttacgtagtaggaatgcagaccgtcgttgtcttcggcaccaaaac |
512 |
Q |
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| T |
43092367 |
aaaggattactgatttggagaacggagatgacatatggaagttcttctacggattttacgtagtaggaatgcagaccgtcgttgtcttcggcaccaaaac |
43092466 |
T |
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| Q |
513 |
cgactttgccaccttttaggt |
533 |
Q |
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| T |
43092467 |
cgactttgccaccttttaggt |
43092487 |
T |
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