View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_15 (Length: 525)

Name: NF20730_low_15
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_15
NF20730_low_15
[»] chr3 (7 HSPs)
chr3 (1-304)||(37686024-37686330)
chr3 (393-506)||(37686401-37686514)
chr3 (199-260)||(40798231-40798292)
chr3 (193-260)||(16851098-16851165)
chr3 (194-260)||(11248530-11248596)
chr3 (197-261)||(20350594-20350661)
chr3 (193-262)||(31977631-31977700)
[»] chr4 (8 HSPs)
chr4 (161-261)||(46165683-46165785)
chr4 (199-262)||(32537493-32537556)
chr4 (193-262)||(7087853-7087922)
chr4 (193-261)||(28322150-28322218)
chr4 (161-261)||(12375926-12376028)
chr4 (193-260)||(46253458-46253525)
chr4 (167-261)||(40239571-40239667)
chr4 (197-253)||(11566843-11566899)
[»] chr2 (5 HSPs)
chr2 (161-261)||(15488176-15488278)
chr2 (161-262)||(43329335-43329438)
chr2 (215-261)||(4015136-4015182)
chr2 (161-261)||(4014205-4014307)
chr2 (193-262)||(36652878-36652950)
[»] chr1 (6 HSPs)
chr1 (161-261)||(9618659-9618761)
chr1 (161-262)||(49874945-49875048)
chr1 (193-262)||(46909607-46909676)
chr1 (169-262)||(46908337-46908432)
chr1 (161-261)||(640990-641092)
chr1 (197-260)||(641488-641551)
[»] chr7 (8 HSPs)
chr7 (194-262)||(25195247-25195315)
chr7 (161-261)||(5026502-5026604)
chr7 (194-262)||(12080394-12080462)
chr7 (161-261)||(35839327-35839429)
chr7 (200-263)||(46332028-46332091)
chr7 (197-261)||(45791284-45791348)
chr7 (161-261)||(26833504-26833606)
chr7 (161-228)||(30471606-30471675)
[»] chr5 (4 HSPs)
chr5 (197-260)||(5200387-5200453)
chr5 (193-261)||(8679535-8679603)
chr5 (161-262)||(8680275-8680378)
chr5 (193-260)||(3892471-3892538)
[»] chr8 (9 HSPs)
chr8 (193-260)||(32585024-32585091)
chr8 (161-261)||(34503092-34503194)
chr8 (197-261)||(4529259-4529323)
chr8 (197-261)||(31746019-31746083)
chr8 (193-260)||(27502599-27502666)
chr8 (193-260)||(38603285-38603352)
chr8 (163-262)||(45252629-45252727)
chr8 (161-239)||(4528208-4528288)
chr8 (198-262)||(44886829-44886891)
[»] scaffold0019 (1 HSPs)
scaffold0019 (197-261)||(134344-134408)
[»] scaffold0283 (1 HSPs)
scaffold0283 (198-262)||(510-572)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 37686024 - 37686330
Alignment:
Q  1 accgcgcttaacttagttccagtattcatgacaaagttaagagttgttggtgtttatatatagcattgaattagactcaaggtattttttggacaatgtt 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37686024 accgcgcttaacttagttccagtattcatgacagagttaagagttgttggtgtttatatatagcattgaattagactcaaggtattttttggacaatgtt 37686123  T
Q  101 actttttatcgttagtcnnnnnnnnnnnt-tactagtatt-gtatatcgtgtatttattcataattgttgttgacacattgtataaagttgtgtcac--g 196  Q
    ||||||||||| | |||             |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  37686124 actttttatcggt-gtcaaaaaaaaaaaaatactagtatttgtatatcgtgtatttattcataattgttgttgacacattgtataaagttgtgtcacacg 37686222  T
Q  197 agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactattatttttaaccgtacgataatatgttaattgtta 296  Q
    | ||||||||||||||||||||||| ||||||||||||||||||  || ||  ||||||||| ||| |||||||||||||||||||||||||||||||||    
T  37686223 aataatttactgaaatgttcatcggcagttaagtgtcgaattatggaaccgattgcagttaattatcatttttaaccgtacgataatatgttaattgtta 37686322  T
Q  297 tgttaata 304  Q
    ||||||||    
T  37686323 tgttaata 37686330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 393 - 506
Target Start/End: Original strand, 37686401 - 37686514
Alignment:
Q  393 tagtcaacgatcttttgtttaattggtgcgcaaaatcttttaacttttagtgttttttcaaaaataaaacaaagataaactaactaaaatggcacaacaa 492  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||    
T  37686401 tagtcaacgatcttttgtttaattggtgcgtaaaatcttttaacttttagtgttttttcaaaaataaaacaaagataaactaactaaaatgacgcagcaa 37686500  T
Q  493 ttgattgtcgggtc 506  Q
    ||||||||||||||    
T  37686501 ttgattgtcgggtc 37686514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 40798231 - 40798292
Alignment:
Q  199 taatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaact 260  Q
    ||||||| | ||||||||||||| |||||| |||||||||||  ||||||||||||||||||    
T  40798231 taatttattcaaatgttcatcggcagttaactgtcgaattatggaatcggctgcagttaact 40798292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 16851098 - 16851165
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaact 260  Q
    ||||||||||||||| |||||  | |||| |||||| || |||||||| |||||||||| ||||||||    
T  16851098 cacgagtaatttactcaaatgcccctcggcagttaactgccgaattatgaaatcggctgtagttaact 16851165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 260
Target Start/End: Original strand, 11248530 - 11248596
Alignment:
Q  194 acgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaact 260  Q
    |||||||| ||| | ||||| || |||| |||||| ||||||||||| ||| |||||||||||||||    
T  11248530 acgagtaaattattcaaatgctcctcggcagttaactgtcgaattatgaaaccggctgcagttaact 11248596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 20350594 - 20350661
Alignment:
Q  197 agtaatttactgaaatgttcatcggtagttaagtgtcgaa---ttataaaatcggctgcagttaacta 261  Q
    ||||||||| | ||||||||||||| |||||| |||||||   ||| ||||| |||||||||||||||    
T  20350594 agtaatttatttaaatgttcatcggcagttaattgtcgaagttttagaaaattggctgcagttaacta 20350661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 31977631 - 31977700
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactat 262  Q
    ||||||||||||||  ||||| ||||||| |||||| |||||||||||  || ||| || ||||||||||    
T  31977631 cacgagtaatttacccaaatgctcatcggcagttaactgtcgaattatggaagcggttgtagttaactat 31977700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 46165683 - 46165785
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgtcacg--agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    |||||||||||||||||||||||| | ||||||||   |||||||||| ||||||| | |||| |||||| |||||||||||  || |||||||||||||    
T  46165683 aattgttgttgacacattgtataaggctgtgtcacactagtaatttaccgaaatgtccttcggcagttaactgtcgaattatggaaccggctgcagttaa 46165782  T
Q  259 cta 261  Q
    |||    
T  46165783 cta 46165785  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 32537493 - 32537556
Alignment:
Q  199 taatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactat 262  Q
    |||||||||||||||||| |||| |||||| ||||||||||| ||||||| |||||||||||||    
T  32537493 taatttactgaaatgttcctcggcagttaactgtcgaattatgaaatcggttgcagttaactat 32537556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 7087853 - 7087922
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactat 262  Q
    |||||||||||||   |||||||| |||||| |||| || ||||||||  ||||||||||||||||||||    
T  7087853 cacgagtaatttatcaaaatgttcctcggtatttaactgccgaattatggaatcggctgcagttaactat 7087922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 28322218 - 28322150
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaacta 261  Q
    ||||||||||||||| |||||| | ||||||||||| || ||||||||  || | ||||||||||||||    
T  28322218 cacgagtaatttactcaaatgtccctcggtagttaactgccgaattatggaaccagctgcagttaacta 28322150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 12375926 - 12376028
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgt--cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    ||||||| ||||||||||| |||||| |||||  ||||||||||||    |||||| | |||| |||||| || ||||||||  || |||||||||||||    
T  12375926 aattgttattgacacattgcataaagctgtgtcacacgagtaatttttcaaaatgtacctcggcagttaactgccgaattatggaaccggctgcagttaa 12376025  T
Q  259 cta 261  Q
    |||    
T  12376026 cta 12376028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 46253458 - 46253525
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaact 260  Q
    ||||||||| ||||| |||||  |||||| |||||| || |||||||| ||| |||||||||||||||    
T  46253458 cacgagtaaattactcaaatgcccatcggcagttaactgccgaattatgaaaccggctgcagttaact 46253525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 261
Target Start/End: Original strand, 40239571 - 40239667
Alignment:
Q  167 tgttgacacattgtataaagttgtgt--cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaacta 261  Q
    |||||||||||||||||| | |||||  ||| |||||||||  ||||||  | ||| ||||||| || | |||||| ||| ||||||||||||||||    
T  40239571 tgttgacacattgtataaggctgtgtcacactagtaatttatcgaaatgcccctcgatagttaactgccaaattatgaaaccggctgcagttaacta 40239667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 11566899 - 11566843
Alignment:
Q  197 agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgca 253  Q
    ||||||||||  |||||| |||||| |||||| || ||||||||| |||||||||||    
T  11566899 agtaatttacctaaatgtccatcggcagttaactgccgaattatagaatcggctgca 11566843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 15488278 - 15488176
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgtcacg--agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    ||||||||||||||||||| |||| ||||||||||   |||||||||  ||||||| | |||  |||||| ||||||||||||||| |||||||||||||    
T  15488278 aattgttgttgacacattgcataaggttgtgtcacattagtaatttatcgaaatgtccctcgacagttaattgtcgaattataaaaccggctgcagttaa 15488179  T
Q  259 cta 261  Q
    |||    
T  15488178 cta 15488176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 43329438 - 43329335
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgtcacg--agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    |||||||||||| | |||| |||||||||||||||   |||||||||  ||||| ||| ||||||||||| || ||||||||  |||||| |||||||||    
T  43329438 aattgttgttgatatattggataaagttgtgtcacattagtaatttatcgaaatattcttcggtagttaactgccgaattatggaatcggttgcagttaa 43329339  T
Q  259 ctat 262  Q
    ||||    
T  43329338 ctat 43329335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 4015182 - 4015136
Alignment:
Q  215 tcatcggtagttaagtgtcgaattataaaatcggctgcagttaacta 261  Q
    ||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  4015182 tcatcggcagttaactgtcgaattatgaaatcggctgcagttaacta 4015136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 4014205 - 4014307
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgtcacg--agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    |||||||||||||||||||||||| ||||||||||   |||||||||  ||||||  | ||   |||||| || |||||||  |||||| ||||||||||    
T  4014205 aattgttgttgacacattgtataaggttgtgtcacactagtaatttatcgaaatgcccttcaccagttaactgccgaattaagaaatcgactgcagttaa 4014304  T
Q  259 cta 261  Q
    |||    
T  4014305 cta 4014307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 36652878 - 36652950
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaa---ttataaaatcggctgcagttaactat 262  Q
    ||||||||||||||| |||||| |||||| |||||| |||||||   ||| |||| ||| |||||||||||||    
T  36652878 cacgagtaatttacttaaatgtccatcggcagttaactgtcgaagttttagaaaaccggatgcagttaactat 36652950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 9618659 - 9618761
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgtcac--gagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    ||||||||||||||||||| |||| | ||||||||  ||||||||||| ||||||||| | || |||||| || ||||||||  || |||||||||||||    
T  9618659 aattgttgttgacacattgcataaggctgtgtcacacgagtaatttaccgaaatgttccttggcagttaactgccgaattatggaaccggctgcagttaa 9618758  T
Q  259 cta 261  Q
    |||    
T  9618759 cta 9618761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 262
Target Start/End: Original strand, 49874945 - 49875048
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgt--cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    ||||||||||||||||||| |||| |||||||  ||||||||||||||| || ||| | |||  |||||| || ||||||||  || |||||||||||||    
T  49874945 aattgttgttgacacattgcataaggttgtgtcacacgagtaatttactaaattgtccctcgacagttaactgccgaattatggaaccggctgcagttaa 49875044  T
Q  259 ctat 262  Q
    ||||    
T  49875045 ctat 49875048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 46909676 - 46909607
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactat 262  Q
    ||||||||| ||||| |||||||| | ||||||||| || ||||||||  ||||||||||||||||||||    
T  46909676 cacgagtaaattacttaaatgttctttggtagttaactgccgaattatggaatcggctgcagttaactat 46909607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 262
Target Start/End: Original strand, 46908337 - 46908432
Alignment:
Q  169 ttgacacattgtataaagttgtgtc--acgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactat 262  Q
    ||||||||||| |||| | ||||||  ||||||||||||| |||||| ||||||| |||||| || ||||||||  ||| || |||||||||||||    
T  46908337 ttgacacattgcataaggctgtgtcgcacgagtaatttaccgaaatgctcatcggcagttaattgccgaattatggaattggttgcagttaactat 46908432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 640990 - 641092
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgt--cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    ||||||||||||||||||| |||| | |||||  ||| |||||||||| |||||| ||||||| |||| | ||  |||||||  |||| ||||||| |||    
T  640990 aattgttgttgacacattgcataaggctgtgtcacactagtaatttaccgaaatgctcatcggcagttgactgcggaattatggaatcagctgcagctaa 641089  T
Q  259 cta 261  Q
    |||    
T  641090 cta 641092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 641551 - 641488
Alignment:
Q  197 agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaact 260  Q
    |||||||||| ||||||||| || | |||||| |||||||||||  || |||||||||||||||    
T  641551 agtaatttaccgaaatgttcctccgcagttaattgtcgaattatggaaccggctgcagttaact 641488  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 25195247 - 25195315
Alignment:
Q  194 acgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactat 262  Q
    |||||||||||| | ||||||||||||| |||||| |||||||||||  ||||| ||||||||||||||    
T  25195247 acgagtaatttattcaaatgttcatcggcagttaactgtcgaattatggaatcgtctgcagttaactat 25195315  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 5026502 - 5026604
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgtcacg--agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    |||||| ||||| |||||| ||||||||| | ||||  ||||||||||||||||| || || | |||||| |||||||||||  || |||||||||||||    
T  5026502 aattgtcgttgagacattgcataaagttgcgccacgctagtaatttactgaaatgctcctcagcagttaactgtcgaattatggaaccggctgcagttaa 5026601  T
Q  259 cta 261  Q
    |||    
T  5026602 cta 5026604  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 12080394 - 12080462
Alignment:
Q  194 acgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactat 262  Q
    ||||||||||||   |||||||| ||||||||||| || ||||||||  ||||||||||||||||||||    
T  12080394 acgagtaatttatccaaatgttcttcggtagttaactgccgaattatggaatcggctgcagttaactat 12080462  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 35839327 - 35839429
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgt--cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    ||||||||||||||||||| |||| |||||||  ||| |||||||||||||||||    |||  |||||| || ||||||||  || |||||||||||||    
T  35839327 aattgttgttgacacattgcataaggttgtgtcacactagtaatttactgaaatgcctttcgacagttaattgccgaattatggaaccggctgcagttaa 35839426  T
Q  259 cta 261  Q
    |||    
T  35839427 cta 35839429  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 46332091 - 46332028
Alignment:
Q  200 aatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactatt 263  Q
    |||||| | ||||||||||||| |||||| ||||||||||| ||||||  ||||||||||||||    
T  46332091 aatttattcaaatgttcatcggcagttaactgtcgaattatcaaatcgattgcagttaactatt 46332028  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 45791284 - 45791348
Alignment:
Q  197 agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaacta 261  Q
    ||||||||||| ||||||   |||| |||||| ||||||||||| ||| ||||||||||||||||    
T  45791284 agtaatttactaaaatgtctttcggcagttaactgtcgaattatgaaaccggctgcagttaacta 45791348  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 26833606 - 26833504
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgt--cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    ||||||||||||||||||  |||| | ||||   ||| |||||||||  ||||||  |||||| |||||| || ||||||||| || |||||||||||||    
T  26833606 aattgttgttgacacattacataaggctgtgctacactagtaatttatcgaaatgcccatcggcagttaactgccgaattatagaaccggctgcagttaa 26833507  T
Q  259 cta 261  Q
    |||    
T  26833506 cta 26833504  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 30471675 - 30471606
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgtcac--gagtaatttactgaaatgttcatcggtagttaa 228  Q
    ||||||||||||||||||| | || | ||||||||  ||||||||||||||||||  | |||||||||||    
T  30471675 aattgttgttgacacattgcaaaaggctgtgtcacacgagtaatttactgaaatgcccctcggtagttaa 30471606  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 5200453 - 5200387
Alignment:
Q  197 agtaatttactgaaatgttcatcggtagttaagtgtcgaa---ttataaaatcggctgcagttaact 260  Q
    ||||||||||  |||||||||||||||||||| |||||||   ||| ||||||||||||||||||||    
T  5200453 agtaatttacctaaatgttcatcggtagttaactgtcgaagttttagaaaatcggctgcagttaact 5200387  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 8679535 - 8679603
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaacta 261  Q
    |||||||||||||||||||||| | |||| |||||| || ||||||||  ||  |||||||||||||||    
T  8679535 cacgagtaatttactgaaatgtccctcggcagttaactgccgaattatggaactggctgcagttaacta 8679603  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 262
Target Start/End: Complemental strand, 8680378 - 8680275
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgt--cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    ||||||||||||||||||| |||| | |||||  ||||||||||||||  |||||  | |||| |||||| || ||||||||  ||  ||||||||||||    
T  8680378 aattgttgttgacacattgcataaggctgtgtcacacgagtaatttacccaaatgcccttcggcagttaactgccgaattatggaacaggctgcagttaa 8680279  T
Q  259 ctat 262  Q
    ||||    
T  8680278 ctat 8680275  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 3892538 - 3892471
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaact 260  Q
    ||||||||| ||||| |||||| | |||| |||||| || |||||||| ||| |||||||||||||||    
T  3892538 cacgagtaaattactcaaatgtccctcggcagttaactgccgaattatgaaaccggctgcagttaact 3892471  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 32585091 - 32585024
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaact 260  Q
    ||||||||| ||||| |||||| | ||||||||||| || |||||||| ||| |||||||||||||||    
T  32585091 cacgagtaaattactcaaatgtccctcggtagttaactgccgaattatgaaaccggctgcagttaact 32585024  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 34503194 - 34503092
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgtcac--gagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaa 258  Q
    ||||||||||||||||||| |||| | ||||||||  ||||||||||| |||||   | |||| |||||| || ||||||||  || |||||||||||||    
T  34503194 aattgttgttgacacattgcataagggtgtgtcacacgagtaatttaccgaaatacccctcggcagttaactgccgaattatggaaccggctgcagttaa 34503095  T
Q  259 cta 261  Q
    |||    
T  34503094 cta 34503092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 4529323 - 4529259
Alignment:
Q  197 agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaacta 261  Q
    ||||||||| |||||||||| ||||||||||| || ||||||||  ||| || ||||||||||||    
T  4529323 agtaatttattgaaatgttcttcggtagttaactgccgaattatggaattggttgcagttaacta 4529259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 31746083 - 31746019
Alignment:
Q  197 agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaacta 261  Q
    ||||||||||| |||||| | |||| |||||| || ||||||||  |||||||||||||||||||    
T  31746083 agtaatttactaaaatgtccttcggcagttaactgccgaattatggaatcggctgcagttaacta 31746019  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 27502666 - 27502599
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaact 260  Q
    ||||||||| ||||| |||||  | |||| |||||| ||||||||||| ||| |||||||||||||||    
T  27502666 cacgagtaaattactcaaatgcccctcggcagttaactgtcgaattatgaaaccggctgcagttaact 27502599  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 38603285 - 38603352
Alignment:
Q  193 cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaact 260  Q
    ||||||||| ||||| |||||||| |||| |||||| || |||||||| ||| || ||||||||||||    
T  38603285 cacgagtaaattacttaaatgttcctcggcagttaactgccgaattatgaaaccgactgcagttaact 38603352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 45252727 - 45252629
Alignment:
Q  163 ttgttgttgacacattgtataaagttgtgtcacgagtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactat 262  Q
    |||||||||||| |||| |||| | ||||| || |||||||||  |||||  |  ||||||||||| | |||||||||| |||||| |||||||||||||    
T  45252727 ttgttgttgacatattgcataaggctgtgttac-agtaatttatcgaaatacttttcggtagttaattatcgaattatagaatcggttgcagttaactat 45252629  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 4528208 - 4528288
Alignment:
Q  161 aattgttgttgacacattgtataaagttgtgt--cacgagtaatttactgaaatgttcatcggtagttaagtgtcgaatta 239  Q
    ||||||| ||||||||||| ||||||||||||  ||| |||||||||   |||||| | |||| |||||| ||||||||||    
T  4528208 aattgttcttgacacattgcataaagttgtgtcacactagtaatttatcaaaatgtccttcggcagttaactgtcgaatta 4528288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 44886891 - 44886829
Alignment:
Q  198 gtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactat 262  Q
    |||||||||| ||||||  ||||| |||||| || ||||||||  ||||||||||||||||||||    
T  44886891 gtaatttactaaaatgt--atcggcagttaactgccgaattatggaatcggctgcagttaactat 44886829  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 134408 - 134344
Alignment:
Q  197 agtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaacta 261  Q
    |||||||||| |||||| || |||| |||||| || ||||||||| || ||||||||||||||||    
T  134408 agtaatttaccgaaatgctcctcggcagttaactgccgaattatagaaccggctgcagttaacta 134344  T

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Target: scaffold0283 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 510 - 572
Alignment:
Q  198 gtaatttactgaaatgttcatcggtagttaagtgtcgaattataaaatcggctgcagttaactat 262  Q
    |||||||||| ||||||  ||||| |||||| || ||||||||  ||||||||||||||||||||    
T  510 gtaatttactaaaatgt--atcggcagttaactgccgaattatggaatcggctgcagttaactat 572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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