View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_16 (Length: 523)
Name: NF20730_low_16
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 176 - 506
Target Start/End: Complemental strand, 7308543 - 7308211
Alignment:
| Q |
176 |
ttgtttcattttatcttttctcactcgtttattagattatcttgtattgttgtttctgtttagcttctgaatgaagactaataattaattagtgattttg |
275 |
Q |
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| T |
7308543 |
ttgtttcattttatcttttctcactc-tttattagattatcttgtattgttgtttctgtttagcttctgaatgaaaactaatgattaattagtgattttg |
7308445 |
T |
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| Q |
276 |
atgttattgtttgtgtttagagataatggttcttctgaattaattaattagttgaatttcaacaactgcattgtcttcttgcttttgtaacaactgcata |
375 |
Q |
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| T |
7308444 |
atgttattgtttgtgtttagagataatggttcttctgaattaattaattagttgaatttcaaaaactgcattgtcttcttgcttttgtaacaactgcata |
7308345 |
T |
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| Q |
376 |
accaattcttgctatattttaatgtgaaacgtagattattaattatgtttatggcaccggtagttcttaatgaggttaacactccctttgaaggtgg--- |
472 |
Q |
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| T |
7308344 |
accaattcttgctatattttaatgtgaaacgtagattattaattatgtttatggcaccggtagttcttaatgaggttaacactccctttgaaggtggtga |
7308245 |
T |
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| Q |
473 |
tggctttctctcggaaagaattccgtctaaaatt |
506 |
Q |
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| T |
7308244 |
tggctttctctcggaaagaattccgtctaaaatt |
7308211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 7308550 - 7308759
Alignment:
| Q |
1 |
atgagaagataaa-attttatgttgtcgttgacttgagataaattcgtataaagctccggagatacgtcattcgatcctccagatca------------- |
86 |
Q |
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| T |
7308550 |
atgagaagataaagattttatgttgttgttgacttgagataaattcgtataaagctccggagatacgtcattcgatcctccagatcaatgttaggttgca |
7308649 |
T |
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| Q |
87 |
-----atgttgattttcttagtttccacgtcctctcttacaaaccgtaacatctccagctgataatccaattgagcaacgacatccttcgccagttgttt |
181 |
Q |
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| T |
7308650 |
tatcaatgttgattttcttagtttccacgtcctctcttacaaaccgtaacatctccagctgataatccaattgagcaactacatccttcgccagttgttt |
7308749 |
T |
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| Q |
182 |
cattttatct |
191 |
Q |
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| T |
7308750 |
ctctttatct |
7308759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 6829144 - 6829092
Alignment:
| Q |
29 |
tgacttgagataaattcgtataaagctccggagatacgtcattcgatcctcca |
81 |
Q |
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| T |
6829144 |
tgacttgagataaattcgaataaagcctcggagacacttcattctatcctcca |
6829092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 6829302 - 6829342
Alignment:
| Q |
318 |
attaattagttgaatttcaacaactgcattgtcttcttgct |
358 |
Q |
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| T |
6829302 |
attagttagttgaatttgaacaactgtattgtcttcttgct |
6829342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 13245810 - 13245870
Alignment:
| Q |
29 |
tgacttgagataaattcgtataaagctccggagatacgtcattcgatcctccagatcaatg |
89 |
Q |
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| T |
13245810 |
tgacttgagataaatccgcataaaactccgtatatacttcattcgatcctcgagatcaatg |
13245870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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