View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_17 (Length: 518)
Name: NF20730_low_17
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 7e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 10 - 185
Target Start/End: Complemental strand, 10028912 - 10028737
Alignment:
| Q |
10 |
attattctaagcaaatttatttaaacatattctaactaagcatttaagaaataaaaccacatttagattcagagtctctgtggatacaatactcttttta |
109 |
Q |
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| T |
10028912 |
attattctaagcaaatttatttaaacatattctaactaaacatttaagaaataaaaccacattcagattcagggtctctgtggatacaatactcttttta |
10028813 |
T |
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| Q |
110 |
ttatgaaaatatatcgtactttttgggttgtatcaagttttcggggctgtttctaaggacttgttgaaaattgaag |
185 |
Q |
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| T |
10028812 |
ttatgaaaatatatcgtacttttttggtcgtatcaagctttcggtgctgtttctaaggacttgttgaaaattgaag |
10028737 |
T |
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Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 261 - 458
Target Start/End: Complemental strand, 10028476 - 10028279
Alignment:
| Q |
261 |
attcatcaccatgacaagtgaatgtcctccaaaaggtaacaaaataccatggccaacaagccctatacagggaattagaaagatgtgtgaatca--accg |
358 |
Q |
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| T |
10028476 |
attcatcaccatgactagtaaccgtcctccggaaggtaacaaaataccatggctaacaagccctatacatggaattagggagatgtgtgagtcaatactg |
10028377 |
T |
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| Q |
359 |
gagttggacagcattcttgaaaatcatggaaagaagcaaccattgatcatgggaacatttcattgaagattcaagatcatcaagtgacaccctctactaa |
458 |
Q |
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| T |
10028376 |
gaattggacaacattcttgaaaatcatggaaagaagcaaccattaat--gggaaacatttccttgaagattcaagatcatcaagtgacaccctctactaa |
10028279 |
T |
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