View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_19 (Length: 502)
Name: NF20730_low_19
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 392; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 481
Target Start/End: Complemental strand, 30117222 - 30116750
Alignment:
| Q |
10 |
atgaagaaaagtggagggaaccaacctcagcttgacctgtctccttgatcaaatgtgagctcaacatcaattgaaatgttttcacagaagtatagtaact |
109 |
Q |
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| T |
30117222 |
atgaagaaaagtggagggaaccaacctcagcttgacctgtctccttgatcaaatgtgagctcaacatcaattgaaatgttttcacagaagcatagtaatt |
30117123 |
T |
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| Q |
110 |
ctgacccttcgtagcctgacatgtcatgaggctttctttggtaagtaccatttaccaagtgataataagaatcacctt-ttttgacagtgtagagggtgt |
208 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| |
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| T |
30117122 |
ctgacccttcgtagcctgacatggcgtgaggctttctttggtaagtaccatttaccaagtgataataggaatcacctttttttgacagtgtagggggtgt |
30117023 |
T |
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| Q |
209 |
tgtgttggtagatatttcctgaatatgaacaacagatagggacaacgattattttattagaacaaagtttggtatcttttcagagttcagatgttgttga |
308 |
Q |
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| T |
30117022 |
tatgttggtagatatttcctgaatatgaacaacagatagggacaacgattattttattagaacgaagtttggtatctcttcagagttcagatgttgttga |
30116923 |
T |
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| Q |
309 |
ttgttgattaaggaattnnnnnnnttgtcatgtgtatcctcagccatctccaggatacaccttagtccataagttgaaaatgtagaacaaagcagaataa |
408 |
Q |
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| T |
30116922 |
ttgttgattaaggaattaaaaaaattgtcatgtgtatcctcagccatctccaggatataccttagtccataagttgaaaatgtagaagaaagcataataa |
30116823 |
T |
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| Q |
409 |
atcaataatatgtatcaatctggcgttttagaagtatgtggactccatttgcgaggatagcgaaaagctttcc |
481 |
Q |
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| T |
30116822 |
atcaataatatgtatcaatctggcattttagaagtatgtggactccatttgcgaggatagcgaaaagctttcc |
30116750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 176
Target Start/End: Complemental strand, 30126808 - 30126642
Alignment:
| Q |
10 |
atgaagaaaagtggagggaaccaacctcagcttgacctgtctccttgatcaaatgtgagctcaacatcaattgaaatgttttcacagaagtatagtaact |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||| || || |||||||||| |||| || ||||| |||| |||||||||||| ||| ||||| | | |
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| T |
30126808 |
atgaagaaaagtggagggaaccaacctcagtttgaccagtttcgttgatcaaatttgagttcgacatcgattgcaatgttttcacaaaagcatagttaat |
30126709 |
T |
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| Q |
110 |
ctgacccttcgtagcctgacatgtcatgaggctttctttggtaagtaccatttaccaagtgataata |
176 |
Q |
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| T |
30126708 |
ccgacccttcgaagcctgacatgttgtgaggctttctttggtaagtattatttaataagtgataata |
30126642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 77 - 266
Target Start/End: Complemental strand, 30114770 - 30114587
Alignment:
| Q |
77 |
caattgaaatgttttcacagaagtatagtaactctgacccttcgtagcctgacatgtcatgaggctttctttggtaagtaccatttaccaagtgataata |
176 |
Q |
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|||||| |||||||||| |||| ||| ||| ||||||||||| ||| |||||||| ||||||||| ||||||| |||||||||||||| | || |
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| T |
30114770 |
caattgcaatgttttca--gaagcataataattctgacccttcaaagcttgacatgttgtgaggcttt----ggtaagtttcatttaccaagtgaaagta |
30114677 |
T |
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| Q |
177 |
agaatcaccttttttgacagtgtagagggtgttgtgttggtagatatttcctgaatatgaacaacagatagggacaacgattattttatt |
266 |
Q |
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| T |
30114676 |
tgtatcacctttttggacagtgtaaggagtgttatgttggtagatatttccagaacatgagcacaagatagggacaatgattgttttatt |
30114587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 30126560 - 30126521
Alignment:
| Q |
15 |
gaaaagtggagggaaccaacctcagcttgacctgtctcct |
54 |
Q |
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| T |
30126560 |
gaaaagtggaaggaaccaacctcagtttgacctgtctcct |
30126521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 21427768 - 21427832
Alignment:
| Q |
409 |
atcaataatatgtatcaatctggcgttttagaagtatgtggactccatttgcgaggatagcgaaa |
473 |
Q |
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||||| ||| |||||||||||||| ||||||||| ||||||| |||||||| ||||||||||| |
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| T |
21427768 |
atcaagaatctgtatcaatctggcattttagaaggatgtggattccatttgtagggatagcgaaa |
21427832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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