View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_22 (Length: 463)
Name: NF20730_low_22
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 30892547 - 30893001
Alignment:
| Q |
1 |
agttgcgtaacacaagaattatcatcacagcaaacagcagaaaaagaatgagaagcagcttcaattgtgtctgattgattcacttcaa----gagaaaaa |
96 |
Q |
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| T |
30892547 |
agttgcgtaacacaagaattatcatcacagcaaacagcagaaaaagaatgagaagcagcttcaattatgtctgattgattcacttcaattgtgagaaaaa |
30892646 |
T |
|
| Q |
97 |
a-ttgttatggtgaaagagttgaaaaattacattgatgttggaatacatataggcaagtttatagtttagtcatttgaagaggaaaaaagaagtgtgata |
195 |
Q |
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| T |
30892647 |
aattgttatggtgaaagagttgaaaaattacattgat---------catataggcaagtttatattttagtcctttgaagaggaaaaaagaagtgtgata |
30892737 |
T |
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| Q |
196 |
taaaatgtagttggacaatatgtaattatacacactttaaggctattcgttccttggagatgaattttacccacacttaatgtatgtttggattaaaaat |
295 |
Q |
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| T |
30892738 |
taaaatgtagttggacacaatgtaattagacacactttaaggctattcgttccttggagatgaatttttcccacacttaatgtatgtttggattaaaaat |
30892837 |
T |
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| Q |
296 |
tgtaaatgtgctttttaatcaaa-gttatttttcaattgtaaatatacattttttacaaatgttttacgtttggatattttcatcgtaaacgtataata- |
393 |
Q |
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||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||||||||||| |
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| T |
30892838 |
tgtaaatgtgctttttaattaaatgttatttttcaattgtaaatatacattttttacaagtgttttatgtttggatactttcattgtaaacgtataatat |
30892937 |
T |
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| Q |
394 |
nnnnnnncttgagagaagaacgtataattgacaatatacatttatgtttctttgcttcatctca |
457 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30892938 |
ttttttccttgagggaagaatgtataattgacaatatacatttatgtttctttgcttcatctca |
30893001 |
T |
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