View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_23 (Length: 456)
Name: NF20730_low_23
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 440
Target Start/End: Complemental strand, 51240072 - 51239632
Alignment:
| Q |
13 |
aaaataaatcagatccactagtaaaaagaagttcataaaaggttagcattgac----atagctcaagtttgtagcggccttgtccatgaccaccatgatc |
108 |
Q |
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| T |
51240072 |
aaaataaatcagatccactagtaaaaagaagttcataaaaggttagcattgacggacatagctcaagtttgtagcggccttgtccatgaccaccatgatc |
51239973 |
T |
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| Q |
109 |
atctctctcttgggtttaagtcttggt---------aagnnnnnnntattaacaaatatttattttgaaattgttaatatactaacatttgtcattcaaa |
199 |
Q |
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| T |
51239972 |
atctctctctcgggtttaagtcttggtgttgaaaaaaatcttaacatattaacaaatatttattttaaaatggttaacatactaacatttgtcattcaaa |
51239873 |
T |
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| Q |
200 |
tnnnnnnnttgtgtattcaaaggcctagacttaaatcaaaccctaaacggtaaactaaatgttgtcgtacatttatcaatatccacgtcgcaatacatat |
299 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
51239872 |
aaaataaattgtgtgttcaaaggcctagacttaaatcaaaccctaaacggtaaactaaatgttgtcgtacgtttatcaatatccacgtcgctatacatat |
51239773 |
T |
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| Q |
300 |
ttgttcttctttcttatcattttcattggcatagtgtatataaaatataccgaggtcaagtcattatcactggaaaatccttatttactaaagaagggtt |
399 |
Q |
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| T |
51239772 |
tagttcttctttcttatcattttcattggcatagtgtatataaaatacaccgaggtcaagtcattatcactagaaaatccttatttactaaagaagggtt |
51239673 |
T |
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| Q |
400 |
aaagcatccacattcatatcacccatatgggtggtataaat |
440 |
Q |
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| T |
51239672 |
aaagcatccacattcatatcactcgtatgggtggtataaat |
51239632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 440
Target Start/End: Original strand, 35158842 - 35158885
Alignment:
| Q |
397 |
gttaaagcatccacattcatatcacccatatgggtggtataaat |
440 |
Q |
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| T |
35158842 |
gttagagcatccacatccatatcactcatatgggtggtataaat |
35158885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 6858966 - 6859004
Alignment:
| Q |
402 |
agcatccacattcatatcacccatatgggtggtataaat |
440 |
Q |
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| T |
6858966 |
agcatccacatccataccacccatatgggtggtataaat |
6859004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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