View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_24 (Length: 436)
Name: NF20730_low_24
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 24684752 - 24684975
Alignment:
| Q |
9 |
acatcatcaaaacacaaacttaaagctatgcaagcttcaatctctccctttttgatgatgtgaaacaccttgttgatgatgttggttgttagcttcacct |
108 |
Q |
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| T |
24684752 |
acatcatcaaaacacaaacttaaagctatgcaagcttcaatctctccctttttgatgatgtcaaacaccttgttgatgatgttggtttttcgctccacct |
24684851 |
T |
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| Q |
109 |
gaaacttagtatacaagaaacatatgcatatggcaaatctatatatagcaccaatcattcctttgttcatacaagtaatcacatgcatgtaaaaacaatg |
208 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
24684852 |
gaaacttagtatacaagaaacacatgcatatggaaaatctatatatagcaccaatcattcctttgctcatacaagcaatcacatgcatgtaaaaacaatg |
24684951 |
T |
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| Q |
209 |
aacttttacatttgcaatcatata |
232 |
Q |
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|||||| ||||||||||||||||| |
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| T |
24684952 |
aactttcacatttgcaatcatata |
24684975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 296 - 417
Target Start/End: Original strand, 24698493 - 24698614
Alignment:
| Q |
296 |
gacaacgttaaaaagggaaagtgcaagagtgtgaagaaattattacaaacttatccaagaggcataatgtcaaaacatattataaaatgcatgaaggaaa |
395 |
Q |
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| T |
24698493 |
gacaacgttaaaaagggaaagtccaagagtgtgaagaaattattacaaacttatccaagaggcataatgtcataacagattataaaatgcatgaaggaaa |
24698592 |
T |
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| Q |
396 |
atgagaaatcactaagcatcca |
417 |
Q |
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| T |
24698593 |
atgagaaatcactaagcatcca |
24698614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 24688032 - 24688092
Alignment:
| Q |
242 |
tagggaagtttaaacataagcagaaaacacatcaacat--gtctttctcctcctttgacaa |
300 |
Q |
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| T |
24688032 |
tagggaagtttaaacataagcagcaaacacatcaacataggtctttctcctcctttgacaa |
24688092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 19391494 - 19391530
Alignment:
| Q |
39 |
caagcttcaatctctccctttttgatgatgtgaaaca |
75 |
Q |
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| T |
19391494 |
caagcttcaatctctccctttttgatgatgtcaaaca |
19391530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 12355286 - 12355242
Alignment:
| Q |
9 |
acatcatcaaaacacaaacttaaagctatgcaagcttcaatctct |
53 |
Q |
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||||||| |||| |||||| |||||||||||||||||||| |||| |
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| T |
12355286 |
acatcattaaaatacaaacctaaagctatgcaagcttcaaactct |
12355242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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