View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_low_25 (Length: 426)
Name: NF20730_low_25
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_25 |
 | |
|
| [»] scaffold0296 (1 HSPs) |
| | |
|
| [»] scaffold0631 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Original strand, 44583277 - 44583674
Alignment:
| Q |
13 |
aatatactcaattgatgtcaaccatgacttcagaacaaaggaaaatatatgacaagataatgacacgggtcattgaaaataaacccggattattttttct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44583277 |
aatatactcaattgatgtcaaccatgacttcagaacaaaggaaaatatatgacaagataatgacacgggtcattgaaaataaacccggattattttttct |
44583376 |
T |
|
| Q |
113 |
tcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggagatattgttctaacagttgcatccagtgga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44583377 |
tcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggagatattgttctaacagttgcatccagtgga |
44583476 |
T |
|
| Q |
213 |
atagctgctttgttgattcctggaggaagaactgcacattcaaggttttccattcctatacatgttgatgaaaactcaacctgcaatattacgcaaggaa |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44583477 |
atagctgctttgttgattcctggaggaagaactgcacattcaaggttttccattcctatacatgttgatgaaaactcaacctgcaatattacgtaaggaa |
44583576 |
T |
|
| Q |
313 |
gccccttagctgaattaatagtcaaggcaaaactcatcatttgggatgaggctccaatgacccataaacattgttttgaagcagttgatagaaccttc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44583577 |
gccccttagctgaattaatagtcaaggcaaaactcatcatttgggatgaggctccaatgacccataaacattgttttgaagcagttgatagaaccttc |
44583674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0296 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0296
Description:
Target: scaffold0296; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 96 - 410
Target Start/End: Complemental strand, 2187 - 1870
Alignment:
| Q |
96 |
cccggattattttttcttcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaagga-gatattgttcta |
194 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| | || |
|
|
| T |
2187 |
cccggatttttttttcttcatgcttccgggggcccaggaaagacttatatttggagggttatgtcagctgcattacgctcaaaaagaagatattggttta |
2088 |
T |
|
| Q |
195 |
acagttgcatccagtggaatagctgctttgttgattcctggaggaa-gaactgcacattcaaggttttccatt-cctatacatgttgatgaaaactcaac |
292 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
2087 |
ccagttgcatccagtggaatagctgctt-gtgatttccctgaggaaagaactgcacattcaaggttttccatttcctatacatgttgatgaaaactca-c |
1990 |
T |
|
| Q |
293 |
ctgcaa-tattacgcaaggaagccccttagctgaattaatagtcaaggcaaaactcatcattt-gggatgaggctccaatgacccataaacattgttttg |
390 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1989 |
ctgcaaatattacgtaaggaagccccttagctgaattaatagtcaaggcaaaactcatcattttgggatgaggctccaatgacccataaacattgttttg |
1890 |
T |
|
| Q |
391 |
aagcagttgatagaaccttc |
410 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1889 |
aagcagttgatagaaccttc |
1870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 41532992 - 41532796
Alignment:
| Q |
85 |
ttgaaaataaacccggattattttttcttcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggaga |
184 |
Q |
| |
|
||||||| ||||||| ||||||||||| |||| || || |||||||| ||||||| ||||||||||||||||||||| ||||| | |||||||| | |
|
|
| T |
41532992 |
ttgaaaacaaacccgacatattttttctttatggttatggaggcacagggaagacttttatttggagggctatgtcagcagcattgagatcaaaaggtca |
41532893 |
T |
|
| Q |
185 |
tattgttctaacagttgcatccagtggaatagctgctttgttgattcctggaggaagaactgcacattcaaggttttccattcctatacatgttgat |
281 |
Q |
| |
|
||||| |||| ||||| || ||||| |||||||| | | ||||| ||||||||||||||||| ||||||||| | ||||||||| || ||||| |
|
|
| T |
41532892 |
aattgtcttaactgttgcttcaagtgggatagctgcactactcattccaggaggaagaactgcacactcaaggtttgctattcctataaatattgat |
41532796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 41532725 - 41532676
Alignment:
| Q |
352 |
tttgggatgaggctccaatgacccataaacattgttttgaagcagttgat |
401 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
41532725 |
tttgggatgaagcaccaatgatgcataaacattgtttcgaagcagttgat |
41532676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 37892683 - 37892615
Alignment:
| Q |
336 |
aaggcaaaactcatcatttgggatgaggctccaatgacccataaacattgttttgaagcagttgataga |
404 |
Q |
| |
|
||||| ||||| ||||| |||||||| || ||||||| |||||||||||||| |||||| | |||||| |
|
|
| T |
37892683 |
aaggctaaacttatcatatgggatgaagcgccaatgatgcataaacattgtttcgaagcactcgataga |
37892615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 256
Target Start/End: Complemental strand, 34418320 - 34418167
Alignment:
| Q |
103 |
tattttttcttcatggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggagatattgttctaacagttgc |
202 |
Q |
| |
|
||||||||||| |||| ||||| |||||||| || || | | | |||||||||||| |||||||||| | ||| |||| || |||||| ||| |||||| |
|
|
| T |
34418320 |
tattttttctttatggttacggtggcacagggaaaacatttttatggagggctatggcagctgcattgagatcacaaggtgagattgttttaatagttgc |
34418221 |
T |
|
| Q |
203 |
atccagtggaatagctgctttgttgattcctggaggaagaactgcacattcaag |
256 |
Q |
| |
|
||||||||| |||||||| || | || |||||||| ||||| ||||||||||| |
|
|
| T |
34418220 |
atccagtggcatagctgcgttactcatacctggaggcagaaccgcacattcaag |
34418167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0631 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 5761 - 5659
Alignment:
| Q |
115 |
atggctacgggggcacaggaaagacttatatttggagggctatgtcagctgcattacgctcaaaaggagatattgttctaacagttgcatccagtggaat |
214 |
Q |
| |
|
|||| ||||| || |||||||| |||| ||||||||| ||||||||| ||||||| | || |||||| | |||||||||||||| || || ||||| || |
|
|
| T |
5761 |
atgggtacggtggtacaggaaaaacttttatttggagagctatgtcatctgcattgagatccaaaggacaaattgttctaacagtagcgtcaagtggtat |
5662 |
T |
|
| Q |
215 |
agc |
217 |
Q |
| |
|
||| |
|
|
| T |
5661 |
agc |
5659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 25613373 - 25613426
Alignment:
| Q |
219 |
gctttgttgattcctggaggaagaactgcacattcaaggttttccattcctata |
272 |
Q |
| |
|
|||||| | ||||||||||| ||||||||||||||| ||||| |||||||||| |
|
|
| T |
25613373 |
gctttgctcattcctggaggtagaactgcacattcacggtttaacattcctata |
25613426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 23178730 - 23178690
Alignment:
| Q |
340 |
caaaactcatcatttgggatgaggctccaatgacccataaa |
380 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
23178730 |
caaaactcataatatgggatgaagctccaatgacccataaa |
23178690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University