View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_27 (Length: 424)
Name: NF20730_low_27
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_27 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 106 - 407
Target Start/End: Original strand, 15697486 - 15697788
Alignment:
| Q |
106 |
gattgtcaaaatatcatatgatgctccatcataagttcccatatgtgcaatgattctccttgagcattcccttgtaagcgtgtcttgctgattgttcgct |
205 |
Q |
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| T |
15697486 |
gattatcaaaatatcatatgatgttccatcatcagttcccatatatgcaatgattctccttgagcattcccttgtaagcgtgtcttgctgattgttctct |
15697585 |
T |
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| Q |
206 |
tatttcaataaaatcctataaaatcctggttgttacctctttgttgggctcctcatgtatttcattacgcacgttgtgtgtga-nnnnnnnngctttgtt |
304 |
Q |
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| T |
15697586 |
tatttcaataaaatcctataaaatcctggttgttacctctttgttgggctcctcatgtatttcattacgcacattgtgtgtgatttttttttgctttgtt |
15697685 |
T |
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| Q |
305 |
gttgttagggcttctggcacatcatgctcgtgccaccaccaatatgttgatggaagtttctttccataaacattatgcctccaacaaaacaaggagatca |
404 |
Q |
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| T |
15697686 |
gttgttagggcttctcgcacatcatgatcgtgccaccgccaatatgttgatggaagtttctttccataaacattatgcctccaacaaaacaaggagatca |
15697785 |
T |
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| Q |
405 |
tct |
407 |
Q |
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||| |
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| T |
15697786 |
tct |
15697788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 15697402 - 15697466
Alignment:
| Q |
17 |
aatacaaaaagttcctctaactattgacaactctactgtatgacttctaatttgccttgaaatac |
81 |
Q |
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| T |
15697402 |
aatacaaaaagttcctctaaccatcgacaactctactgtatgacttctaatttgccttgaaatac |
15697466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 58794 - 58732
Alignment:
| Q |
17 |
aatacaaaaagttcctctaactattgacaactctactgtatgacttctaatttgccttgaaat |
79 |
Q |
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| T |
58794 |
aatacaaaaagttcctcaaaccattgacaactcctctgattgacttctaatttgccttcaaat |
58732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 17198821 - 17198880
Alignment:
| Q |
17 |
aatacaaaaagttcctctaactattgacaactctactgtatgacttctaatttgccttgaaat |
79 |
Q |
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| T |
17198821 |
aatacaaaaagttcctcaaaccattaacaactcta---aatgacttctaatttgccttcaaat |
17198880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 15298935 - 15298991
Alignment:
| Q |
17 |
aatacaaaaagttcctctaactattgacaactctactgtatgacttctaatttgcct |
73 |
Q |
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|||||||||| |||||| ||| |||||||||||| | |||||||||||||||||| |
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| T |
15298935 |
aatacaaaaacttcctcaaaccattgacaactcttgtaaatgacttctaatttgcct |
15298991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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