View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_3 (Length: 888)

Name: NF20730_low_3
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_3
NF20730_low_3
[»] chr8 (1 HSPs)
chr8 (11-888)||(8548225-8549111)


Alignment Details
Target: chr8 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 11 - 888
Target Start/End: Complemental strand, 8549111 - 8548225
Alignment:
Q  11 agcagcacagagcctaaagagcatcgaacaaaatatcaaccatatccatatgcattgccaatacacagttgaaaaaccaatgaagtcctcctcaaaccct 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8549111 agcaacacagagcctaaagagcatcgaacaaaatatcaaccatatccatatgcattgccaatgcacagttgaaaaaccaatgaagtcctcctcaaaccct 8549012  T
Q  111 cttatcactcaaaagtagcttaatgcatggaccaaaattagtgttgtagaagacaaaattcagaggcagaccaaacatacacaagcccttactctaagtc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8549011 cttatcactcaaaagtagcttaatgcatggaccaaaattagtgttgtagaagacaaaattcagaggcagaccaaacatacacaagcccttactctaagtc 8548912  T
Q  211 cacctttcnnnnnnnn-------gaaagaactct-aagtccacctnnnnnnngtaatttacactctccattctannnnnnnct-aaatacctaacggtta 301  Q
    || ||||                ||||||||||| ||||||||||       ||||| ||||||||||||||||       || |||||||||| |||||    
T  8548911 caactttttttttttttttttttgaaagaactcttaagtccacctaaaaaaagtaatatacactctccattctatttttttcttaaatacctaatggtta 8548812  T
Q  302 gactcacacactataaatactgaaaagaggagaacttgaaattcgaactccgacctcctctatggcaatgttcatagagctgccattttagcacgcactt 401  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8548811 gactcacacactataaatactgagaagaggagaacttgaaattcgaactccgacctcctctacggcaatgttcatagagctgccattttagcacgcactt 8548712  T
Q  402 ataaaacattctcgattctatattacataagtcattttagcacaaaaaattgctcaatttataagttattttataatatcatcgagtattatttccaccc 501  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8548711 ataaaacactctcgattctatattacataagtcattttagcactaaaaattgctcaatttataagttattttataatatcattgagtattatttccaccc 8548612  T
Q  502 ctattattttacccttaatctctctttagagtattcttttcaattcttgtaattgtattttttaattgtcaatgcaagttggtccatttggtatgaattt 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548611 ctattattttacccttaatctctctttagagtattcttttcaattcttgtaattgtattttttaattgtcaatgcaagttggtccatttggtatgaattt 8548512  T
Q  602 aaaccatattaggcaaagacttcttgttgatatgtgtattttgatattacaagacaagaggttgtggaataccgagatttcnnnnnnnnnnnnggaagaa 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||            |||||||    
T  8548511 aaaccatattaggcaaagacttcttgttgatatgtgtattttgatattacaagacgagaggttgtggaatactaagatttcaaaaaagaaaaaggaagaa 8548412  T
Q  702 tatttaattttgttccttcaatatgagtgagataaaggaagaaaattaatattacaatgtattgcaggaaccaattttaataatatttacaaggactaaa 801  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8548411 tatttaattttgttccttcaatatgagtgagataaaggaagaaaattaatattacaatgtattgcaggaaccaatttttataatatttacaaggactaaa 8548312  T
Q  802 ataagacaannnnnnnatagactaaaaacagaaaatgtttatatttgtaggatccaaatgtatatttaaacctctttttaatctata 888  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8548311 ataagacaatttttttatagactaaaaacagaaaatgtttatatttgtaggatccaaatgtatatttaaacctctatttaatctata 8548225  T

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