View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_31 (Length: 414)
Name: NF20730_low_31
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 4568761 - 4568377
Alignment:
| Q |
13 |
aatatacgtagactagtaaagccatcactacctgctggatattggggaaatggttgtgttccaatgtatgttcaattgagtgctaaagatttgatagaac |
112 |
Q |
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| T |
4568761 |
aatatacgtagactagtaaagccatcactacctgctggatattggggaaatggttgtgttccaatgtatgttcaattgagtgctaaagatttgatagaac |
4568662 |
T |
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| Q |
113 |
aacccatttgggaaacagcagaactaataagaaagagtaaaaccaatgtcactgatgagtatattcgctctttcattgattatcaacatttgcattatgc |
212 |
Q |
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| T |
4568661 |
aacccatttgggaaacagcagaactaataagaaagagtaaaaccaatgtcactgatgagtatgttcgctctttcattgattatcaacatttgcattatgc |
4568562 |
T |
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| Q |
213 |
tgatgggatcacagcaggaaaatgggtgagtggtttcactgattggagacacttaggccattcaactgtggattttggttggggaggtcctgttactgtt |
312 |
Q |
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| T |
4568561 |
tgatgggatcacagcaggaaaatgggtgagtggtttcactgattggagacacttgggccattcaactgtggattttggttggggaggtcctgttactgtt |
4568462 |
T |
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| Q |
313 |
ttgccacttggtagaaacctgcttgggagtgttgaaccttgttactttttgccttattcaatagccagtgctgacaaaaagaatg |
397 |
Q |
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| T |
4568461 |
ttgccacttggtagaaacctgcttgggagtgttgaaccttgttactttttgccttattcaatagccagtgctgacaaaaagaatg |
4568377 |
T |
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