View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_33 (Length: 407)
Name: NF20730_low_33
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 28290266 - 28289954
Alignment:
| Q |
12 |
aatactagtatacaaacataatacaccaaacatggtgagggtcatac----tagatcaccatgcacgtagcgaagtacaaacatatcatgacctttaagt |
107 |
Q |
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| T |
28290266 |
aatactagtatacaaacataatacaccaaacatggtgagggtcatacatactagatcaccatgcacgtagcgaagtacaaacatatcatgacctttaagt |
28290167 |
T |
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| Q |
108 |
catcaacactcttgattagaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaaatcaaagctgtg |
207 |
Q |
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| T |
28290166 |
caccaacactcttgattagaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaatt-aatcaaagctgtg |
28290068 |
T |
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| Q |
208 |
agcaaagaatagtttttgaaaaacaaaatttacgaattaaagttatgttttaataccatgttaaaacatctgcacaaatgagtgaatagaagaaaaggaa |
307 |
Q |
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| T |
28290067 |
atcagagaatagtttttgaaaaacaaaatttacgaattaaagtcatgttttaataccatgttaaaacatctgcacaaatgagtgaatagaagaaaaggaa |
28289968 |
T |
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| Q |
308 |
accccctctgcgtt |
321 |
Q |
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| T |
28289967 |
accccctctgcgtt |
28289954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 100 - 236
Target Start/End: Complemental strand, 28281910 - 28281774
Alignment:
| Q |
100 |
ctttaagtcatcaacactcttgattagaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaaatca |
199 |
Q |
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| T |
28281910 |
ctttaagtcaccaatactattgattaaaagttcacaaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaagtta |
28281811 |
T |
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| Q |
200 |
aagctgtgagcaaagaatagtttttgaaaaacaaaat |
236 |
Q |
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| T |
28281810 |
aagttgtggtcagagaatagtttttgaaaaacaaaat |
28281774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 28302949 - 28302889
Alignment:
| Q |
135 |
aaaaatgtaaaatatctaacctgtgagaacagcattcagcaagagaacgccctgaaattaaa |
196 |
Q |
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| T |
28302949 |
aaaaatgtaaa-tatctaacctgtgagaacagcattcagtaagagaacgccctgaaattaaa |
28302889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 351
Target Start/End: Complemental strand, 19250977 - 19250906
Alignment:
| Q |
279 |
gcacaaatgagtgaatagaagaaaaggaaaccccctctgcgtttagaacagacactttcctaacttcataaga |
351 |
Q |
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| T |
19250977 |
gcacaaatgagtgaatgacagaaaaggaaacccg-tccgtgtttagaacagacactttcctaacttcataaga |
19250906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 28281991 - 28281950
Alignment:
| Q |
12 |
aatactagtatacaaacataatacaccaaacatggtgagggt |
53 |
Q |
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| T |
28281991 |
aatactagtatacaaacataatacaccaaacatagtaagggt |
28281950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 28303021 - 28302978
Alignment:
| Q |
12 |
aatactagtatacaaacataatacaccaaacatggtgagggtca |
55 |
Q |
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| T |
28303021 |
aatactagtatacaagcataatacaccaaacatagtcagggtca |
28302978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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