View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_34 (Length: 400)
Name: NF20730_low_34
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 15248734 - 15248363
Alignment:
| Q |
13 |
aaaatattgaaggatactaaccgtaaatgtaataattacgatatataaaatagttgaatgattcgtcaaaaaatatagtaaaatgattatagcatttcat |
112 |
Q |
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| T |
15248734 |
aaaatattgaaggatactaaccgtaaatgtaataattacgatatataaaatagttgaacgattcgtcaaaaaatatagtaaaatgattatagcatttcat |
15248635 |
T |
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| Q |
113 |
atttcgttttataaatataaagacatatttcttacccattctacgaagaaatgacnnnnnnnatctcctgataaacctggaaatacctgccaccaatgtg |
212 |
Q |
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| T |
15248634 |
atttcgttttataaatataaagacatatttcttacccattctacgaagaaatgactttttttatctcctgacaaacctggaaatacctgccaccaatgtg |
15248535 |
T |
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| Q |
213 |
gaagagattagcgattgttaacggtgagcgagtggtttctaggtgaattcacctacgtggttaaacgatgttacatgaactcattctacgtagattgaat |
312 |
Q |
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| T |
15248534 |
gaagagattagcgattgttaacggtgagggagtggtttctaggtgaactcacctacgtggttaagcgatgttacatgaactcaatctacgtagattgaat |
15248435 |
T |
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| Q |
313 |
tcac----ctacgtggttaagcgatgttacatgaactcaatctacgtagattgaaattaacatagcttacgt |
380 |
Q |
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| T |
15248434 |
tcacctagctacgtggttaagcgatgttacatgaactcaatctacgtagattgaaattaacatagcctacgt |
15248363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 166
Target Start/End: Complemental strand, 15230538 - 15230503
Alignment:
| Q |
131 |
aaagacatatttcttacccattctacgaagaaatga |
166 |
Q |
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| T |
15230538 |
aaagacatatttcttacccattctacgaagaaatga |
15230503 |
T |
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