View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_37 (Length: 391)

Name: NF20730_low_37
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_37
NF20730_low_37
[»] chr8 (8 HSPs)
chr8 (18-383)||(44312137-44312490)
chr8 (25-332)||(44301285-44301596)
chr8 (20-269)||(43896006-43896255)
chr8 (25-269)||(44306459-44306704)
chr8 (78-258)||(43895493-43895668)
chr8 (78-258)||(44305917-44306092)
chr8 (287-331)||(43895902-43895946)
chr8 (287-331)||(44306353-44306397)
[»] chr3 (1 HSPs)
chr3 (18-332)||(4084057-4084375)
[»] chr6 (1 HSPs)
chr6 (19-206)||(8159121-8159311)
[»] chr4 (1 HSPs)
chr4 (20-258)||(18701618-18701862)
[»] chr5 (1 HSPs)
chr5 (82-233)||(35856905-35857052)
[»] chr7 (1 HSPs)
chr7 (82-122)||(15040308-15040348)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 44312490 - 44312137
Alignment:
Q  18 taaggaagttgatgaagctcatgctggagaaattgtttttgtatttggtgctattcttagatctggagatacttttactgatgggtctgttagatatata 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312490 taaggaagttgatgaagctcatgctggagaaattgtttttgtgtttggtgctattcttagatctggagatacttttactgatgggtctgttagatatata 44312391  T
Q  118 atgacctctgccgatgttcctgcttaatcggtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatcctact 217  Q
    ||||| |||||||||||||        || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312390 atgacttctgccgatgttc--------tccgtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatcctact 44312299  T
Q  218 tcgccagttggtttggcttgttaactttgctttggtttgttgcttatttataacttannnnnnnatggtgaatttgttgcttaattattgatctctgatt 317  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  44312298 tcgccagttggtttggcttgttaactatgctttggtttgttgcttatttataacttatttttttatggtgaatttgttgcttaattattgatctctgatt 44312199  T
Q  318 agttagtagttactctcnnnnnnnnngttgtgttctgcatttttaacagttgatcctatctctgct 383  Q
    ||||||||||||  |||         |||||||||||||  |||||||||||||||||||||||||    
T  44312198 agttagtagtta--ctcattttttttgttgtgttctgca--tttaacagttgatcctatctctgct 44312137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 25 - 332
Target Start/End: Complemental strand, 44301596 - 44301285
Alignment:
Q  25 gttgatgaagctcatgctggagaaattgtttttgtatttggtgctattcttagatctggagatacttttactgatgggtctgttagatatataatgacct 124  Q
    ||||||||||||||||| |||||||||||| |||| || | |  | |||||| |||||||||||||||||||||||||||||||||||||| |||| | |    
T  44301596 gttgatgaagctcatgccggagaaattgttattgtgttagctattgttcttaaatctggagatacttttactgatgggtctgttagatatacaatgtctt 44301497  T
Q  125 ctgccgatgttcctgcttaatcggtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaa-----gagaattgatcctacttc 219  Q
    |||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| |     | ||| |||||||||||     
T  44301496 ctgccgatgttcctacttattcggtgtcaaaagattctggagagaaattttcaaatggtgtgaattgattcattccattccagtgaaatgatcctactta 44301397  T
Q  220 gccagttggtttggcttgttaactttgctttggtttgttgcttatttataacttannnnnnnatggtgaatttgttgcttaattattgatctctgattag 319  Q
     |||||| ||||||||||||| ||||||| || ||||||||||||||||||||||       ||||| ||| || |||||||||||||||||||||||||    
T  44301396 cccagtttgtttggcttgttagctttgctatgttttgttgcttatttataactta-ttttttatggtaaatctgctgcttaattattgatctctgattag 44301298  T
Q  320 ttagtagttactc 332  Q
    |||||||||||||    
T  44301297 ttagtagttactc 44301285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 43896255 - 43896006
Alignment:
Q  20 aggaagttgatgaagctcatgctggagaaattgtttttgtatttggtgctattcttagatctggagatacttttactgatgggtctgttagatatataat 119  Q
    |||||||||||||||||||||||||||| ||| || |||| || | ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||    
T  43896255 aggaagttgatgaagctcatgctggagagattattattgtgttagatgctattcttaaatctggagatactttcactgatgggtctgttagatatacaat 43896156  T
Q  120 gacctctgccgatgttcctgcttaatcggtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttc 219  Q
    ||| |||||||||||||||| ||| ||  ||||| ||| |||||||||||||||||||||||||||| |||||||||||| || ||| |||||||||||     
T  43896155 gacttctgccgatgttcctgattattctatctcataagattctggagagaaattttcaaatggtgtggatggattcattctagggaagtgatcctactta 43896056  T
Q  220 gccagttggtttggcttgttaactttgctttggtttgttgcttatttata 269  Q
     ||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  43896055 cccagttgctttggcttgttagctttgctatggtttgttgcttatttata 43896006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 25 - 269
Target Start/End: Complemental strand, 44306704 - 44306459
Alignment:
Q  25 gttgatgaagctcatgctggagaaattgtttttgtatttggtgctattcttagatctggagatacttttactgatgggtctgttagatatataatgacct 124  Q
    |||||||||||||||||||||||||||||| |  | || | |||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |    
T  44306704 gttgatgaagctcatgctggagaaattgttatgttgttcgatgctcttcttaaatctggagatacttttactgatgggtctgttagatatacaatgactt 44306605  T
Q  125 ctgccgatgttcctgcttaatcggtctcaaaagtttctggagaga-aattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgcca 223  Q
    |||||||||||||| |||| || |||||| ||| |||||||||||   |||||||||||||||||||||||||||| || ||| |||||||||||  |||    
T  44306604 ctgccgatgttcctacttattctgtctcataagattctggagagagttttttcaaatggtgtgaatggattcattctagggaaatgatcctacttaccca 44306505  T
Q  224 gttggtttggcttgttaactttgctttggtttgttgcttatttata 269  Q
    |||| |||||||||||| ||||||| ||||||||||||||||||||    
T  44306504 gttgctttggcttgttagctttgctatggtttgttgcttatttata 44306459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 43895668 - 43895493
Alignment:
Q  78 atctggagatacttttactgatgggtctgttagatatataatgacctctgccgatgttcctgcttaatcggtctcaaaagtttctggagagaaattttca 177  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||||| | || ||| | |||  ||||||||||||| |||||||| | ||||||||    
T  43895668 atctggagatacttttgctgatgggtctgttagatattcaatgacctctgtcaatattcttacttgttcggtctcaaaagattctggagggcaattttca 43895569  T
Q  178 aatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactttgctttggtttgtt 258  Q
    | || | ||||||| |   ||||| ||||  ||||||||||  |||||||||||||||| ||| |||| |||||| |||||    
T  43895568 actgctttgaatggtt---ttcaa-agaaaggatcctactttcccagttggtttggcttattagcttt-ctttggattgtt 43895493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 78 - 258
Target Start/End: Complemental strand, 44306092 - 44305917
Alignment:
Q  78 atctggagatacttttactgatgggtctgttagatatataatgacctctgccgatgttcctgcttaatcggtctcaaaagtttctggagagaaattttca 177  Q
    |||||||||||||||| |||||||||| |||||||||  ||||||||||| | || ||| | |||  ||||||||||||| |||||||| | ||||||||    
T  44306092 atctggagatacttttgctgatgggtccgttagatattcaatgacctctgtcaatattcttacttgttcggtctcaaaagattctggagggcaattttca 44305993  T
Q  178 aatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactttgctttggtttgtt 258  Q
    | || | ||||||| |   ||||| ||||  ||||||||||  |||||||||||||||||||| |||| |||||| |||||    
T  44305992 agtgctttgaatggtt---ttcaa-agaaaggatcctactttcccagttggtttggcttgttagcttt-ctttggattgtt 44305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 43895946 - 43895902
Alignment:
Q  287 gaatttgttgcttaattattgatctctgattagttagtagttact 331  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  43895946 gaatttgttgcttaattattgatctctgattatttagtagttact 43895902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 44306397 - 44306353
Alignment:
Q  287 gaatttgttgcttaattattgatctctgattagttagtagttact 331  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  44306397 gaatttgttgcttaattattgatctctgattatttagtagttact 44306353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 4084375 - 4084057
Alignment:
Q  18 taaggaagttgatgaagctcatgctggagaaattgtttttgtatt------tggtgctattcttagatctggagatacttttactgatgggtctgttaga 111  Q
    ||||| ||||||||||||||||||||||||| ||||| |||| ||      || ||||||||||| ||||||||||||||||||||| |||||| |||||    
T  4084375 taaggcagttgatgaagctcatgctggagaacttgttattgtgttaaagtttgatgctattcttaaatctggagatacttttactgacgggtctattaga 4084276  T
Q  112 tatataatgacctctgccgatgttcctgcttaatcggtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgat 211  Q
    |||| |||||| |||||||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  4084275 tatacaatgacttctgccgatgttcctgcttattcggtctcaaaggattcaggagagaaattttcaaatggtgtgaatggattcattccagagaaatgat 4084176  T
Q  212 cctacttcgccagttggtttggcttgttaactttgctttggtttgttgcttatttataacttannnnnnnatggtgaatttgttgcttaattattgatct 311  Q
    |||||||  |||||||||||||||||||| |||| || |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  4084175 cctactt-accagttggtttggcttgttagctttactatggtttgttgcttatttataactta-ttttttatggtgaatttgttgcttaattattgatct 4084078  T
Q  312 ctgattagttagtagttactc 332  Q
    |||||||||||||||||||||    
T  4084077 ctgattagttagtagttactc 4084057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 8159121 - 8159311
Alignment:
Q  19 aaggaagttgatgaagctcatgctggagaaattgtttttgtatttggtgctattcttagatctggagatacttttactgatgggtctgttagatatataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||  ||||  |||||||||||||||||| ||||||||||||||||||||||    
T  8159121 aaggaagttgatgaagctcatgctggagaaattgtttttgtgtttgatgctcatcttgaatctggagatacttttaccgatgggtctgttagatatataa 8159220  T
Q  119 tgacct---ctgccgatgttcctgcttaatcggtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaa 206  Q
    |||| |   |||| |||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||    
T  8159221 tgacttctgctgctgatgttcctgcttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaa 8159311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 18701862 - 18701618
Alignment:
Q  20 aggaagttgatgaagctcatgctggagaaattgtttttgtatttggtgctattcttagatctggagatacttttactg---atgggtctgttagatatat 116  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||  ||||  |||||||||||||||||| |   ||||||||||||||||||     
T  18701862 aggaagttgatgaagctcatgctggagaaattgtttttgtttttgatgctcatcttgaatctggagatacttttaccgccaatgggtctgttagatatac 18701763  T
Q  117 aatgacctctgccgatgttcctgcttaatcggtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagaga---attgatcc 213  Q
    |||||| ||||| |||||||||||||| ||||||||||||| ||| ||  | | ||||||||||||||||||| ||||||||| |||||   | ||||||    
T  18701762 aatgacttctgctgatgttcctgcttattcggtctcaaaagattccgggcatacattttcaaatggtgtgaattgattcattctagagaaataatgatcc 18701663  T
Q  214 tacttcgccagttggtttggcttgttaactttgctttggtttgtt 258  Q
    |||||  || |||||||||| || ||| ||||||  |||||||||    
T  18701662 tacttaccctgttggtttggtttattagctttgcaatggtttgtt 18701618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 35856905 - 35857052
Alignment:
Q  82 ggagatacttttactgatgggtctgttagatatataatgacctctgccgatgttcctgcttaatcggtctcaaaagtttctggagagaaattttcaaatg 181  Q
    ||||| || ||||||||||||||||||||||     ||||| |||||| |||||| || ||| ||||||||||||| |||| | ||| ||| ||||||||    
T  35856905 ggagaaacatttactgatgggtctgttagatgggctatgacttctgccaatgttcttgattattcggtctcaaaagattctagcgagcaatcttcaaatg 35857004  T
Q  182 gtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttgg 233  Q
     |||||||||    |||  |||||| |||||||||||  |||||||||||||    
T  35857005 ttgtgaatgg----attacagagaaatgatcctacttacccagttggtttgg 35857052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 15040348 - 15040308
Alignment:
Q  82 ggagatacttttactgatgggtctgttagatatataatgac 122  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  15040348 ggagatacttttactgatgggtctgttaaatatacaatgac 15040308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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