View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_38 (Length: 389)

Name: NF20730_low_38
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_38
NF20730_low_38
[»] chr1 (5 HSPs)
chr1 (5-216)||(36721941-36722152)
chr1 (217-371)||(36722189-36722343)
chr1 (41-216)||(24158018-24158193)
chr1 (97-216)||(6468629-6468748)
chr1 (5-114)||(37104999-37105107)
[»] chr5 (1 HSPs)
chr5 (5-216)||(35875369-35875579)
[»] chr3 (2 HSPs)
chr3 (5-216)||(39915024-39915233)
chr3 (73-166)||(33752661-33752754)
[»] chr4 (6 HSPs)
chr4 (5-214)||(32295611-32295819)
chr4 (55-217)||(11896020-11896181)
chr4 (73-213)||(3243613-3243753)
chr4 (54-190)||(25376171-25376306)
chr4 (71-214)||(13808445-13808595)
chr4 (9-147)||(40575307-40575444)
[»] chr7 (3 HSPs)
chr7 (41-216)||(490935-491109)
chr7 (5-118)||(47488388-47488500)
chr7 (79-154)||(42883769-42883844)
[»] chr2 (1 HSPs)
chr2 (109-216)||(6372661-6372768)
[»] scaffold0361 (1 HSPs)
scaffold0361 (74-154)||(6446-6526)
[»] chr8 (1 HSPs)
chr8 (71-142)||(4940550-4940621)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 36721941 - 36722152
Alignment:
Q  5 acctacaagtggagagcgactccaaagtcttggtcaacatggtaactaagaaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtg 104  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36721941 acctacaagtggagagcgactccaaagtcttggtcgacatggtaactaagaaatgcaacatcaacgggaaatgttcctaccttgatttggcacatttgtg 36722040  T
Q  105 atctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaaagaaacaaatcggcggaatggctagcaaattttagtcaatctttggactc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36722041 atctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaaagaaacaaatcggcggaatggctagcaaattttagtcaatctttggactc 36722140  T
Q  205 ttttgatttaca 216  Q
    ||||||||||||    
T  36722141 ttttgatttaca 36722152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 371
Target Start/End: Original strand, 36722189 - 36722343
Alignment:
Q  217 cctttttgatgatatttctgatacttacatgcttcaaaattttcgtttaatcgcttaaannnnnnnncttttcttaagctctgccctcttcttgtnnnnn 316  Q
    ||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||||||          |||||||| |||||||||||||||||||         
T  36722189 ccttttttatgatatttctggtacttacatgcctcaaaatgttcgtttaatcgcttagtttttttttcttttcttgagctctgccctcttcttgtaaaaa 36722288  T
Q  317 nnnnctagacaccttctatctaaatgaccattgttatcatattttggttttgaat 371  Q
        |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  36722289 aaaactagacaccttctatctaaatgactattgttatcatattttggctttgaat 36722343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 24158018 - 24158193
Alignment:
Q  41 acatggtaactaagaaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtgatctaaaaaacatgagttgtcaagttcaaatcaacc 140  Q
    ||||||||||   ||||| ||||||||| || ||| |||||||||||||||  || |||| |||| ||||||||||||||||| ||  |||| |||||||    
T  24158018 acatggtaacatggaaatataacatcaatggaaaa-gttcctaccttgattcagcgcattcgtgacctaaaaaacatgagttggcatattcatatcaacc 24158116  T
Q  141 atacatggcgtgaaa-gaaacaaatcggcggaatggctagcaaattttagtcaatctttggactcttttgatttaca 216  Q
    ||||||||||||||| |||||| ||| || || |||| ||| |||||||||| ||||| |||| | |||||||||||    
T  24158117 atacatggcgtgaaaggaaacagatcagcagattggcaagctaattttagtctatcttcggacacctttgatttaca 24158193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 6468748 - 6468629
Alignment:
Q  97 catttgtgatctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaaagaaacaaatcggcggaatggctagcaaattttagtcaatct 196  Q
    |||||| || |||||||| |||||||| || ||||| ||||||||||||| ||||||| |||||||||| || || |||||||| |||||||||| ||||    
T  6468748 catttgggacctaaaaaatatgagttggcatgttcatatcaaccatacatagcgtgaaggaaacaaatcagcagattggctagctaattttagtctatct 6468649  T
Q  197 ttggactcttttgatttaca 216  Q
    |||||| | |||||||||||    
T  6468648 ttggacacatttgatttaca 6468629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 37104999 - 37105107
Alignment:
Q  5 acctacaagtggagagcgactccaaagtcttggtcaacatggtaactaagaaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtg 104  Q
    |||||||||| ||||||||||||||||| |||||| |||| |||||| | |||||||||||||| | | |||||| ||||||| ||||||| |||| ||     
T  37104999 acctacaagtagagagcgactccaaagttttggtcgacatagtaactgaaaaatgtaacatcaatgag-aatgtttctaccttaatttggcgcattcgta 37105097  T
Q  105 atctaaaaaa 114  Q
    ||||||||||    
T  37105098 atctaaaaaa 37105107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 35875369 - 35875579
Alignment:
Q  5 acctacaagtggagagcgactccaaagtcttggtcaacatggtaactaagaaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtg 104  Q
    |||| ||||||||||||||||||||||| |||||| | |||||||||  ||||||||||||||| | ||| |||||||||||||||| ||| |||| |||    
T  35875369 accttcaagtggagagcgactccaaagttttggtcgatatggtaactgggaaatgtaacatcaatgagaa-tgttcctaccttgattcggcgcattcgtg 35875467  T
Q  105 atctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaaagaaacaaatcggcggaatggctagcaaattttagtcaatctttggactc 204  Q
    |||||||||  |||||||| ||||||||||||||||||| |||||||||| |||||| ||||||||| ||||||||||||||||||| |||||| |||||    
T  35875468 atctaaaaactatgagttggcaagttcaaatcaaccatatatggcgtgaaggaaacagatcggcggattggctagcaaattttagtctatctttagactc 35875567  T
Q  205 ttttgatttaca 216  Q
     |||||| ||||    
T  35875568 ctttgatataca 35875579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 39915024 - 39915233
Alignment:
Q  5 acctacaagtggagagcgactccaaagtcttggtcaacatggtaactaagaaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtg 104  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||| | |||||||| |  ||||||| |||||||| |||    
T  39915024 acctacaagtggagagcgactccaaagttttggtcgacatggtaactaggaaatgtaacatcaac-gaaaatgttcgtgtcttgattcggcacattcgtg 39915122  T
Q  105 atctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaaagaaacaaatcggcggaatggctagcaaattttagtcaatctttggactc 204  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||  |||||| | ||||||||||| ||||| | |||||| |||||    
T  39915123 atctaaaaaacatgagttggcaagttcaaatcaaccatacatgacgtg-aagaaacatgtcggcgaattggctagcaaagtttagactatctttagactc 39915221  T
Q  205 ttttgatttaca 216  Q
     ||||| |||||    
T  39915222 ctttgaattaca 39915233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 166
Target Start/End: Original strand, 33752661 - 33752754
Alignment:
Q  73 aaatgttcctaccttgatttggcacatttgtgatctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaaagaaacaaatcg 166  Q
    ||||||||||||||||||||||| |||   ||| ||||| | ||||| ||| |||||||| ||||||||||||  || |||| |||||||||||    
T  33752661 aaatgttcctaccttgatttggcgcatccatgacctaaagatcatgaattgacaagttcagatcaaccatacacagcttgaaggaaacaaatcg 33752754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 32295819 - 32295611
Alignment:
Q  5 acctacaagtggagagcgactccaaagtcttggtcaacatggtaactaagaaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtg 104  Q
    |||||||||||||||||||||| ||||| ||||| ||| |||||||   |||||||||||| || ||||| |||||||||||||||| ||  |||| |||    
T  32295819 acctacaagtggagagcgactctaaagttttggttaacgtggtaacatggaaatgtaacattaatgggaa-tgttcctaccttgattcggtgcattcgtg 32295721  T
Q  105 atctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaaagaaacaaatcggcggaatggctagcaaattttagtcaatctttggactc 204  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| | || || | || ||| | ||||||||||  |||||||| ||    
T  32295720 atctaaaaaacatgagttgacaagttcaaatcaaccatacaaggcgtgaaggaaacataacgacgaattgactaactaattttagtctctctttggattc 32295621  T
Q  205 ttttgattta 214  Q
    ||||||||||    
T  32295620 ttttgattta 32295611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 55 - 217
Target Start/End: Complemental strand, 11896181 - 11896020
Alignment:
Q  55 aaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtgatctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaa 154  Q
    ||||||||||||||||  ||||||||||||||| |||  || |||| |||| ||||||||||||||||| || ||||| |||||||||||||||||||||    
T  11896181 aaatgtaacatcaacga-aaatgttcctaccttaattcagcgcattcgtgacctaaaaaacatgagttggcatgttcatatcaaccatacatggcgtgaa 11896083  T
Q  155 agaaacaaatcggcggaatggctagcaaattttagtcaatctttggactcttttgatttacac 217  Q
     |||| | ||| || || |||||||| |||||||||| |||||||||| | |||||| |||||    
T  11896082 ggaaatagatcagcagattggctagctaattttagtctatctttggacgcctttgatctacac 11896020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 73 - 213
Target Start/End: Original strand, 3243613 - 3243753
Alignment:
Q  73 aaatgttcctaccttgatttggcacatttgtgatctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaaagaaacaaatcggcggaa 172  Q
    ||||||||||||||||||| |||||||| |||| ||||||||||||||||  || ||||| |||||||||||||||| |||| |||||||||| || ||     
T  3243613 aaatgttcctaccttgattcggcacattcgtgacctaaaaaacatgagttagcatgttcagatcaaccatacatggcctgaaggaaacaaatcagcagat 3243712  T
Q  173 tggctagcaaattttagtcaatctttggactcttttgattt 213  Q
    ||| |||| || ||||||| |||||||||| | ||||||||    
T  3243713 tggttagctaactttagtctatctttggacacctttgattt 3243753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 25376306 - 25376171
Alignment:
Q  54 gaaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtgatctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtga 153  Q
    ||||||||||||||| || ||||||||||||||||||||||| ||||  ||| ||||||||||||||||| || ||||| ||||||||||| ||||||||    
T  25376306 gaaatgtaacatcaatgg-aaatgttcctaccttgatttggcgcattcatgacctaaaaaacatgagttggcatgttcagatcaaccatacctggcgtga 25376208  T
Q  154 aagaaacaaatcggcggaatggctagcaaattttagt 190  Q
    | |||||||||| || || |||||||| || ||||||    
T  25376207 aggaaacaaatcagcagattggctagctaactttagt 25376171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 13808445 - 13808595
Alignment:
Q  71 ggaaatgttcctaccttgatttggcacatttgtgatctaaaaaacatgagttgtcaagttcaaat-------caaccatacatggcgtgaaagaaacaaa 163  Q
    ||||||||||||||||||||||| | |||| | || ||||||||||||||||| || ||||| ||       ||||||||||||| ||||| ||||||||    
T  13808445 ggaaatgttcctaccttgatttgtcgcattcgggagctaaaaaacatgagttggcatgttcatatgtcatatcaaccatacatggtgtgaaggaaacaaa 13808544  T
Q  164 tcggcggaatggctagcaaattttagtcaatctttggactcttttgattta 214  Q
    || |  || |||||||| |||||||||| ||||||| || | |||||||||    
T  13808545 tcagtagactggctagctaattttagtctatctttgaacacctttgattta 13808595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 40575444 - 40575307
Alignment:
Q  9 acaagtggagagcgactccaaagtcttggtcaacatggtaactaagaaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtgatct 108  Q
    |||| ||||||||||||| ||||| ||  |  | |||||||| ||||||||||| |||||   ||| |||||||||| |||||||||  ||| || | ||    
T  40575444 acaaatggagagcgactcaaaagttttattagatatggtaacaaagaaatgtaatatcaattagaa-tgttcctaccctgatttggcgtattcgtaacct 40575346  T
Q  109 aaaaaacatgagttgtcaagttcaaatcaaccatacatg 147  Q
    |||||||| |||||  ||||||||||||||| |||||||    
T  40575345 aaaaaacacgagttagcaagttcaaatcaactatacatg 40575307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 41 - 216
Target Start/End: Original strand, 490935 - 491109
Alignment:
Q  41 acatggtaactaagaaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtgatctaaaaaacatgagttgtcaagttcaaatcaacc 140  Q
    ||||||||||   ||||||||||||||| || |||||||||||||||||||  || |||| |||| ||||||||||||||||| || ||||| |||||||    
T  490935 acatggtaacagggaaatgtaacatcaatgg-aaatgttcctaccttgattcagcgcattcgtgacctaaaaaacatgagttggcatgttcatatcaacc 491033  T
Q  141 atacatggcgtgaaagaaacaaatcggcggaatggctagcaaattttagtcaatctttggactcttttgatttaca 216  Q
    |||||||| ||||| |||||| |||  | || |||||||| |||||||||| |||||||||| | |||||||||||    
T  491034 atacatggagtgaaggaaacagatcaacagattggctagctaattttagtctatctttggacacctttgatttaca 491109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 47488388 - 47488500
Alignment:
Q  5 acctacaagtggagagcgactccaaagtcttggtcaacatggtaactaagaaatgtaacatcaacgggaaatgttcctaccttgatttggcacatttgtg 104  Q
    |||||||||||||||||  |||| |||| |||||||||| || ||| | ||||||||||||||| ||||| |||||||||||||||||| | ||||||||    
T  47488388 acctacaagtggagagcagctcctaagttttggtcaacagggaaacaaggaaatgtaacatcaatgggaa-tgttcctaccttgatttgtcgcatttgtg 47488486  T
Q  105 atctaaaaaacatg 118  Q
    ||||||||||||||    
T  47488487 atctaaaaaacatg 47488500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 42883844 - 42883769
Alignment:
Q  79 tcctaccttgatttggcacatttgtgatctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaa 154  Q
    ||||||||||| ||||| |||||||||  | |||||||||| ||| || |||||||| |||||||| | |||||||    
T  42883844 tcctaccttgacttggcgcatttgtgagtttaaaaacatgaattggcatgttcaaattaaccatacttagcgtgaa 42883769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 6372661 - 6372768
Alignment:
Q  109 aaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaaagaaacaaatcggcggaatggctagcaaattttagtcaatctttggactctttt 208  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| || |||||||| |||||||||  |||||||||||  |||    
T  6372661 aaaaaacatgagttggcaagttcaaatcaaccatacttggcgtgaaggaaacaaatcggctgattggctagctaattttagtgtatctttggacttcttt 6372760  T
Q  209 gatttaca 216  Q
    ||||||||    
T  6372761 gatttaca 6372768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 6446 - 6526
Alignment:
Q  74 aatgttcctaccttgatttggcacatttgtgatctaaaaaacatgagttgtcaagttcaaatcaaccatacatggcgtgaa 154  Q
    |||||| ||||||| ||| ||| |||| || | |||||| |||||||||| ||||||  ||| ||||||||||||||||||    
T  6446 aatgtttctaccttcattcggcgcattggttacctaaaatacatgagttggcaagtttgaattaaccatacatggcgtgaa 6526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 4940550 - 4940621
Alignment:
Q  71 ggaaatgttcctaccttgatttggcacatttgtgatctaaaaaacatgagttgtcaagttcaaatcaaccat 142  Q
    ||||||| || |||||| ||| ||| |||| |||||||||||  ||||||||| ||||| ||||||||||||    
T  4940550 ggaaatgctcttaccttcattcggcgcattcgtgatctaaaatgcatgagttggcaagtacaaatcaaccat 4940621  T

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