View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_42 (Length: 370)
Name: NF20730_low_42
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_42 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: scaffold0096 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 93 - 360
Target Start/End: Original strand, 28131 - 28391
Alignment:
| Q |
93 |
aaaatcgtaacattcatcttctttattctttctctctccaatcgattcaatttttcacaatgaaccagagagttccttcatcttaaactgtttgaatcgg |
192 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| || |
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| T |
28131 |
aaaatcgtaacattcatcttctgtattctttctctctccaatcgattcaatttttcacaaggaaccagagcgttccttcatctcgaactgtttgaattgg |
28230 |
T |
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| Q |
193 |
ccgagtcaagcctcaagctcctggtaatcgcaccattttctgtgatgatcgttaatctaatcatcatcttcaattcaagattcaaggttcgctccatcca |
292 |
Q |
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| T |
28231 |
ccgagtcaagcttcaagctcctggtaatcgcaccatcttctgtgatgatcgttaatctaatcatcatcttc-------gatttaaggttcgctccatcca |
28323 |
T |
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| Q |
293 |
tttagtcgcattgcacttttccgattttgttgccaacgaaattttcgtaactatataatcttgatatt |
360 |
Q |
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| T |
28324 |
tttcgttgcattgcacttttccgattttgttgcaaacgaaattttcgtaactgtagaatcttgatatt |
28391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 93 - 360
Target Start/End: Complemental strand, 12538455 - 12538193
Alignment:
| Q |
93 |
aaaatcgtaacattcatcttctttattctttctctctccaatcgattcaatttttcacaatgaaccagagagttccttcatcttaaactgtttgaatcgg |
192 |
Q |
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|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||| ||||||| |||| || |
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| T |
12538455 |
aaaatcgtaacatttatcttctgtattctttctctctccaatcgattcaattttttacaaggaaccagagcgttccttcatctcgaactgttcgaattgg |
12538356 |
T |
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| Q |
193 |
ccgagtcaagcctcaagctcctggtaatcgcaccattttctgtgatgatcgttaatctaatcatcatcttcaattcaagattcaaggttcgctccatcca |
292 |
Q |
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| T |
12538355 |
ccgagtcaagcttcaagctcctggtaatcgcaccatcttttgtgatgatcgttaatctaatcatcatcttc-------gatttaaggttcgctccatcca |
12538263 |
T |
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| Q |
293 |
tttagtcgcattgcacttttccgattttgttgccaacgaaa--ttttcgtaactatataatcttgatatt |
360 |
Q |
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| T |
12538262 |
tttcgccacattgcacttttccgattttgttgcaaatgaaattttttcgtaactgtagaatcttgatatt |
12538193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 45640392 - 45640207
Alignment:
| Q |
25 |
tttcactttcattccttcttcatattcgccacagaataacaaaaaacaac----gtatg-ttaaattcaaaccaaaatcgtaacattcatcttctttatt |
119 |
Q |
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| T |
45640392 |
tttcagtttcatcctttcttcatattcgccacagaataaccaaaaacaaacagtgtacggttaaattcaaaccaaaatgttaaccttcatcttcttcatc |
45640293 |
T |
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| Q |
120 |
ctttctctctccaatcgattcaatttttcacaatgaaccagagagttccttcatcttaaactgtttgaatcggccgagtcaagcct |
205 |
Q |
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| T |
45640292 |
ctttctcttttcaatcgattcgagtttccacaattaatcagaacgttccttcatatcgaacggtttgaatcggctgagtcaagcct |
45640207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 24 - 360
Target Start/End: Complemental strand, 16253399 - 16253059
Alignment:
| Q |
24 |
ttttcactttcattccttcttcatattcgccacagaataacaaaaa-----acaacgtatg-ttaaattcaaaccaaaatcgtaacattcatcttcttta |
117 |
Q |
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| T |
16253399 |
ttttcagtttcatcctttcttcatattcgccacagaataaccaaaacacaaacaatgtacggttaaattcaaaccaaaaccgtaaccttcatcttcctca |
16253300 |
T |
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| Q |
118 |
ttctttctctctccaatcgattcaatttttcacaatgaaccagagagttccttcatcttaaactgtttgaatcggccgagtcaagcctcaagctcctggt |
217 |
Q |
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|||||||||||| ||||| |||| | ||||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||||||||||||||| |
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| T |
16253299 |
ttctttctctcttcaatcaattcgacttttcacaatgaaccagagcgttccttcatctcgaaacgttcgaatcggccgagtcaagcctcaagctcctggt |
16253200 |
T |
|
| Q |
218 |
aatcgcaccattttctgtgatgatcgttaatctaatcatcatcttcaattcaagattcaaggttcgctccatccatttagt---cgcattgcacttttcc |
314 |
Q |
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| T |
16253199 |
aaccgcaccatcttctgtaacgatcggctagccaatcatcatcttc-------gattcaaggttcgctccatccatttcttcaccgcattgcacttttcc |
16253107 |
T |
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| Q |
315 |
gattttgttg--ccaacgaaattttcgtaactatataatcttgatatt |
360 |
Q |
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||||| |||| ||||||||||||||||||| || |||||||||||| |
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| T |
16253106 |
gatttcgttgctccaacgaaattttcgtaaccgtagaatcttgatatt |
16253059 |
T |
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