View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_low_44 (Length: 356)
Name: NF20730_low_44
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_44 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 7308550 - 7308802
Alignment:
| Q |
1 |
atgagaagataaa-attttatgttgtcgttgacttgagataaattcgtataaagctccggagatacgtcattcgatcctccagatca------------- |
86 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7308550 |
atgagaagataaagattttatgttgttgttgacttgagataaattcgtataaagctccggagatacgtcattcgatcctccagatcaatgttaggttgca |
7308649 |
T |
|
| Q |
87 |
-----atgttgattttcttagtttccacgtcctctcttacaaaccgtaacatctccagctgataatccaattgagcaacgacatccttcgccagttgttt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7308650 |
tatcaatgttgattttcttagtttccacgtcctctcttacaaaccgtaacatctccagctgataatccaattgagcaactacatccttcgccagttgttt |
7308749 |
T |
|
| Q |
182 |
ctctttatctacttcatcaatattgtccatctgaaccaactcattcattgtca |
234 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7308750 |
ctctttatctacttcatcaacattgtccatctgaaccaactcattcattgtca |
7308802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 6829144 - 6829092
Alignment:
| Q |
29 |
tgacttgagataaattcgtataaagctccggagatacgtcattcgatcctcca |
81 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| || |||||| |||||||| |
|
|
| T |
6829144 |
tgacttgagataaattcgaataaagcctcggagacacttcattctatcctcca |
6829092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 13245810 - 13245870
Alignment:
| Q |
29 |
tgacttgagataaattcgtataaagctccggagatacgtcattcgatcctccagatcaatg |
89 |
Q |
| |
|
||||||||||||||| || ||||| ||||| | |||| ||||||||||||| ||||||||| |
|
|
| T |
13245810 |
tgacttgagataaatccgcataaaactccgtatatacttcattcgatcctcgagatcaatg |
13245870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University