View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_45 (Length: 354)

Name: NF20730_low_45
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_45
NF20730_low_45
[»] chr8 (22 HSPs)
chr8 (3-188)||(14113229-14113422)
chr8 (1-187)||(14110097-14110289)
chr8 (244-336)||(14110322-14110418)
chr8 (1-81)||(1784135-1784215)
chr8 (1-81)||(6590797-6590877)
chr8 (8-81)||(44329203-44329276)
chr8 (1-79)||(43841226-43841304)
chr8 (18-81)||(24185563-24185626)
chr8 (8-81)||(6649094-6649167)
chr8 (145-182)||(14120820-14120857)
chr8 (8-86)||(30358598-30358680)
chr8 (8-81)||(42158403-42158475)
chr8 (1-81)||(40737869-40737948)
chr8 (1-48)||(44329171-44329218)
chr8 (1-50)||(9503528-9503577)
chr8 (1-46)||(27988093-27988138)
chr8 (1-49)||(27988157-27988206)
chr8 (1-46)||(28045395-28045440)
chr8 (1-49)||(28045459-28045508)
chr8 (172-200)||(14110291-14110319)
chr8 (8-48)||(39282165-39282205)
chr8 (1-41)||(40223308-40223348)
[»] chr1 (15 HSPs)
chr1 (1-81)||(49166654-49166734)
chr1 (1-86)||(8900808-8900893)
chr1 (1-81)||(41944784-41944864)
chr1 (1-86)||(5700075-5700160)
chr1 (1-81)||(5368789-5368868)
chr1 (1-81)||(34890200-34890280)
chr1 (1-81)||(35489211-35489291)
chr1 (1-46)||(1609978-1610023)
chr1 (1-61)||(37247586-37247646)
chr1 (1-46)||(24419614-24419659)
chr1 (1-49)||(10332051-10332099)
chr1 (26-81)||(11900867-11900922)
chr1 (1-47)||(36618888-36618934)
chr1 (2-46)||(31032457-31032501)
chr1 (1-41)||(37247658-37247698)
[»] chr7 (12 HSPs)
chr7 (1-86)||(2399714-2399799)
chr7 (1-81)||(34670367-34670447)
chr7 (4-43)||(40992815-40992854)
chr7 (8-81)||(21955381-21955453)
chr7 (1-81)||(13468879-13468959)
chr7 (8-78)||(23097550-23097620)
chr7 (1-46)||(2635678-2635723)
chr7 (8-81)||(14574979-14575052)
chr7 (8-81)||(15996137-15996210)
chr7 (1-46)||(17801463-17801508)
chr7 (2-46)||(15996197-15996241)
chr7 (1-81)||(40992745-40992825)
[»] chr4 (16 HSPs)
chr4 (1-81)||(38562140-38562220)
chr4 (1-81)||(10065080-10065160)
chr4 (1-81)||(52840282-52840361)
chr4 (33-80)||(17236164-17236211)
chr4 (1-81)||(6371961-6372041)
chr4 (1-48)||(33004185-33004232)
chr4 (26-81)||(54918984-54919039)
chr4 (8-86)||(52378695-52378773)
chr4 (1-46)||(38562207-38562252)
chr4 (1-86)||(44626438-44626523)
chr4 (1-81)||(20783735-20783815)
chr4 (1-42)||(8311322-8311363)
chr4 (8-81)||(8678989-8679062)
chr4 (1-46)||(20291796-20291841)
chr4 (1-81)||(23673402-23673482)
chr4 (1-49)||(39993120-39993168)
[»] chr2 (11 HSPs)
chr2 (9-81)||(43445052-43445124)
chr2 (1-81)||(41517378-41517458)
chr2 (1-85)||(11565015-11565099)
chr2 (1-81)||(14725225-14725305)
chr2 (1-65)||(29168562-29168626)
chr2 (1-81)||(33956332-33956412)
chr2 (5-65)||(36472117-36472177)
chr2 (1-46)||(30429083-30429128)
chr2 (1-46)||(41517445-41517490)
chr2 (1-77)||(9895597-9895677)
chr2 (1-49)||(19268074-19268122)
[»] chr5 (13 HSPs)
chr5 (8-63)||(19522539-19522594)
chr5 (8-86)||(14509842-14509920)
chr5 (8-91)||(8355585-8355668)
chr5 (1-81)||(14751171-14751251)
chr5 (1-46)||(7065666-7065711)
chr5 (8-81)||(28499828-28499901)
chr5 (8-81)||(30046328-30046401)
chr5 (1-86)||(32522569-32522654)
chr5 (1-48)||(20269521-20269568)
chr5 (1-35)||(15712213-15712247)
chr5 (31-81)||(31146719-31146769)
chr5 (1-46)||(28351025-28351070)
chr5 (2-46)||(14958924-14958968)
[»] chr6 (8 HSPs)
chr6 (8-81)||(26296230-26296303)
chr6 (8-86)||(16260644-16260722)
chr6 (1-46)||(5069954-5069999)
chr6 (1-69)||(862880-862947)
chr6 (8-86)||(9910516-9910593)
chr6 (1-86)||(24252927-24253007)
chr6 (1-63)||(8050992-8051054)
chr6 (1-46)||(14093095-14093140)
[»] chr3 (6 HSPs)
chr3 (1-81)||(16867664-16867744)
chr3 (236-301)||(33232027-33232092)
chr3 (8-91)||(10937933-10938016)
chr3 (1-46)||(18093792-18093837)
chr3 (1-86)||(29212884-29212969)
chr3 (1-81)||(18093824-18093904)
[»] scaffold0777 (1 HSPs)
scaffold0777 (4-81)||(4729-4806)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 188
Target Start/End: Original strand, 14113229 - 14113422
Alignment:
Q  3 taagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaatacattt-------catt 95  Q
    ||||||||||| |||||||||  ||||| ||||||||||||||| ||||| ||||||||||||| || ||||||||||| |||  || |       ||||    
T  14113229 taagcaaaaaataactttttaggtacatccaataattaatgtatctaacccataaatgtgaccgtatacattaattattcaatgtatctaaaaagtcatt 14113328  T
Q  96 ttttacttataaatataatcggagggagtacgttttttggtctagtgatttag-acaaataaaaaacgttttttaaatgtgaagggattttaaa 188  Q
    ||||||||| |||||| | || ||||||||||||||||||||||||||||||| |  || |||||| ||||||||||||| ||||||| |||||    
T  14113329 ttttacttagaaatatgaccgaagggagtacgttttttggtctagtgatttagtaagaaaaaaaaaagttttttaaatgtcaagggatattaaa 14113422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 14110097 - 14110289
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaatacattt-------ca 93  Q
    ||||||||||||| ||||||| | |||||| |||||| |||||||||||||| ||||||||||| | ||| ||||||| || |||  || |       ||    
T  14110097 tataagcaaaaaataactttt-agatacatccaataactaatgtatttaaccgataaatgtgactgaatctattaattcttcaatgtatctaaaaagtca 14110195  T
Q  94 ttttttacttataaatataatcggagggagtacgttttttggtctagtgatttagacaaataaaaaacgttttttaaatgtgaagggattttaa 187  Q
    ||||||  |||||||||| | || | | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  14110196 ttttttgtttataaatatgaccgaatgaagtacttttttgggtctagtgatttagacaaataaaaaacgttttttaaatgtcgagggatgttaa 14110289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 14110322 - 14110418
Alignment:
Q  244 catcacaatgtcggcacgtatac-----tcatagttctatgcctaaaatggtaaaatctgatgtagaaacacaaatagtgctgacattgatcatggca 336  Q
    |||||||||||||||||||| ||     |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  14110322 catcacaatgtcggcacgtacactcatatcatagttctatgcctaaaaaggtaaaatctgatgtagaaacac-aatagtgctgacattgatcttggca 14110418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 1784215 - 1784135
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||| ||||| |||||| ||||||||| |||||| ||||    
T  1784215 tataagcaaaaaacaactttttagatacatctaataattaatgtatctaacccataaatatgaccggatacattaaatatt 1784135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6590797 - 6590877
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||||||||| |||  ||||| ||||||| ||||||| ||||| |||||| ||||||||| |||||||||||    
T  6590797 tataagcaaaaaacaacttcttaggtacatccaataatcaatgtatctaacccataaatatgaccggatacattaattatt 6590877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 44329276 - 44329203
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||||||  ||||| ||||||||||||||| ||||| ||||||||||||  || |||||||||||    
T  44329276 aaaaaacaactttttaggtacatccaataattaatgtatctaacccataaatgtgaccaaatacattaattatt 44329203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 43841304 - 43841226
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaatta 79  Q
    ||||||||||||| ||  ||||||||||||| |||||||||||||| ||||  |||||||| || ||||| ||||||||    
T  43841304 tataagcaaaaaataatattttaaatacatttaataattaatgtatctaactcataaatgttactggatcaattaatta 43841226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 24185563 - 24185626
Alignment:
Q  18 tttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||| ||||||| |||||||||| ||| ||||| ||||||||||| |||| |||||||||||    
T  24185563 tttttagatacattgaataattaatatatctaacctataaatgtgactggatacattaattatt 24185626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 6649094 - 6649167
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||| |||||||||  ||||| ||||||| ||||||| ||||| || ||| ||||||||| |||||||||||    
T  6649094 aaaaaaaaactttttaggtacatccaataatcaatgtatctaacccatgaatatgaccggatacattaattatt 6649167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 14120820 - 14120857
Alignment:
Q  145 ttagacaaataaaaaacgttttttaaatgtgaagggat 182  Q
    |||||||||||||||||||||||||||||| |||||||    
T  14120820 ttagacaaataaaaaacgttttttaaatgtcaagggat 14120857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 30358598 - 30358680
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtat----ttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    ||||||||| |||||| ||||||| ||||||||||||||    |||| | |||||||||||||||| ||||| ||||| ||||    
T  30358598 aaaaaacaattttttacatacattgaataattaatgtatctaattaatctataaatgtgaccggatacattatttattcaata 30358680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 42158403 - 42158475
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||||||  ||||| ||||||| ||||||| ||||  ||||||||||| |||| |||||||||||    
T  42158403 aaaaaacaactttttaggtacatccaataat-aatgtatctaactcataaatgtgactggatacattaattatt 42158475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 40737948 - 40737869
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||| |  ||||||  |||||| |||||||||||||| | |||  ||||||||||||||| |||||||||||    
T  40737948 tataagcaaaaaatagttttttaggtacattgaataattaatgtatctgacct-taaatgtgaccggatacattaattatt 40737869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 44329171 - 44329218
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtattt 48  Q
    |||||||||||||  | |||||||||||||| ||||||||||||||||    
T  44329171 tataagcaaaaaatgattttttaaatacattgaataattaatgtattt 44329218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 9503577 - 9503528
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaa 50  Q
    ||||||||||||||||||||||  || |||| |||| |||||||||||||    
T  9503577 tataagcaaaaaacaactttttcgattcattgaatatttaatgtatttaa 9503528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 27988093 - 27988138
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||||||||||||||||||||| | |||| ||||| ||||||||    
T  27988093 tataagcaaaaaacaactttttaagttcattgaataagtaatgtat 27988138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 27988206 - 27988157
Alignment:
Q  1 tataagcaaaa-aacaactttttaaatacattcaataattaatgtattta 49  Q
    ||||||||||| |||||||||||| || |||| |||||||||||||||||    
T  27988206 tataagcaaaacaacaactttttagattcattgaataattaatgtattta 27988157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28045395 - 28045440
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||||||||||||||||||||| | |||| ||||| ||||||||    
T  28045395 tataagcaaaaaacaactttttaagttcattgaataagtaatgtat 28045440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28045508 - 28045459
Alignment:
Q  1 tataagcaaaa-aacaactttttaaatacattcaataattaatgtattta 49  Q
    ||||||||||| |||||||||||| || |||| |||||||||||||||||    
T  28045508 tataagcaaaacaacaactttttagattcattgaataattaatgtattta 28045459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 14110291 - 14110319
Alignment:
Q  172 tgtgaagggattttaaaggataatttact 200  Q
    |||||||||||||||||||||||||||||    
T  14110291 tgtgaagggattttaaaggataatttact 14110319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 39282205 - 39282165
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtattt 48  Q
    ||||||||||| |||||||||||| ||||||||| ||||||    
T  39282205 aaaaaacaactatttaaatacattgaataattaacgtattt 39282165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40223348 - 40223308
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaa 41  Q
    ||||||||||||||||| ||||| ||||||| |||||||||    
T  40223348 tataagcaaaaaacaacgttttagatacattgaataattaa 40223308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 49166734 - 49166654
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||||||||||||  |||||| |||||||||||||| ||||| ||||||||||| |||| |||||||||||    
T  49166734 tataagcaaaaaacaactttttagttacattgaataattaatgtatctaacctataaatgtgactggatacattaattatt 49166654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 8900808 - 8900893
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    |||||| || |||||||||||||  |||||| |||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||    
T  8900808 tataagtaataaacaactttttaggtacattgaataattaatgtatctaacctataaatgtgaccggatacattaattattcaata 8900893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41944784 - 41944864
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||||||||||||  || || ||||||||||||||| ||||| |||||||||||||| | |||||||||||    
T  41944784 tataagcaaaaaacaactttttaggtatatccaataattaatgtatctaacccataaatgtgaccgggtacattaattatt 41944864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 5700160 - 5700075
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||| | | |||||| ||| ||||| ||||||||||| ||||    
T  5700160 tataagcaaaaaacaactttttaagtacattgaataattaatgcatttgatctataaatatgatcggatacattaattattcaata 5700075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 5368789 - 5368868
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||| ||||||| |  ||||| ||||||||||||||| ||||| |||||||||||||||| |||||||||||    
T  5368789 tataagcaaaaaataactttt-atgtacatccaataattaatgtatctaacccataaatgtgaccggatacattaattatt 5368868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34890200 - 34890280
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||||||||||||| ||||||| ||||| |||| ||| ||||  |||||||| ||||||| |||||||||||    
T  34890200 tataagcaaaaaacaactttttagatacattgaataactaatatatctaacatataaatgtaaccggatacattaattatt 34890280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 35489211 - 35489291
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||| ||||| |||||| | ||| ||| |||||||||||    
T  35489211 tataatcaaaaaacaactttttagatacattgaataattaatgtatctaacctataaatatcaccagattcattaattatt 35489291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1609978 - 1610023
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  1609978 tataagcaaaaaacaactttttagatacattgaataattaatgtat 1610023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37247586 - 37247646
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgt 61  Q
    ||||||||||||| || |||||| ||||||| |||||||||||||| ||||| ||||||||    
T  37247586 tataagcaaaaaataaatttttagatacattgaataattaatgtatctaacctataaatgt 37247646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 24419659 - 24419614
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||    
T  24419659 tataagcaaaaaacaactttttaggtacattgaataattaatgtat 24419614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10332051 - 10332099
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtattta 49  Q
    |||||||||||||||||||||||||| || | ||||| |||||||||||    
T  10332051 tataagcaaaaaacaactttttaaattcaatgaataactaatgtattta 10332099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 11900867 - 11900922
Alignment:
Q  26 tacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||| |||||||||||||||| ||| |||||||||||| |||  ||||||||||    
T  11900867 tacattgaataattaatgtatttgacctataaatgtgaccagatatattaattatt 11900922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36618934 - 36618888
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatt 47  Q
    |||||| ||||||||| ||||||| |||||| |||||||||||||||    
T  36618934 tataagtaaaaaacaattttttaactacattgaataattaatgtatt 36618888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 31032457 - 31032501
Alignment:
Q  2 ataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||||||||||||||||||| || |||  ||||||||||||||    
T  31032457 ataagcaaaaaacaactttttagattcatgaaataattaatgtat 31032501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37247698 - 37247658
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaa 41  Q
    |||||| |||||| ||||||||||||||||| |||||||||    
T  37247698 tataagtaaaaaataactttttaaatacatttaataattaa 37247658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2399714 - 2399799
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    |||||||||||||||||||| ||| |||||| |||| ||||||||| ||||  |||||||||||||||| ||||||||||| ||||    
T  2399714 tataagcaaaaaacaactttctaagtacattgaatagttaatgtatctaacttataaatgtgaccggatacattaattattcaata 2399799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 34670367 - 34670447
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||||||||||||  ||||| |||| |||||||||| |||   |||||||||| ||||| |||||||||||    
T  34670367 tataagcaaaaaacaactttttaggtacatccaatcattaatgtatctaatacataaatgtgatcggatacattaattatt 34670447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 40992854 - 40992815
Alignment:
Q  4 aagcaaaaaacaactttttaaatacattcaataattaatg 43  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  40992854 aagcaaaaaacaactttttaaatacattgaataattaatg 40992815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 21955453 - 21955381
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||||| ||||||| ||||||| |||||| | ||  ||||||||||| |||| |||||||||||    
T  21955453 aaaaaacaactttttagatacattgaataatt-atgtatctgacatataaatgtgactggatacattaattatt 21955381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 13468959 - 13468879
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||| ||||||||| ||||||  || ||| |||||| ||| ||| ||||| |||||||||||||||| |||| ||||||    
T  13468959 tataaggaaaaaacaattttttatgtagattgaataatcaatttatataacctataaatgtgaccggatacatttattatt 13468879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 23097620 - 23097550
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaatt 78  Q
    |||||| |||||||||  || ||| |||||||||||||||||||  ||||||||||  |||| ||||||||    
T  23097620 aaaaaataactttttaggtagattgaataattaatgtatttaacttataaatgtgatgggatacattaatt 23097550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2635723 - 2635678
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||| ||||||||| |||||||||||||| ||||| ||||||||    
T  2635723 tataagtaaaaaacaattttttaaatacattgaataactaatgtat 2635678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 14574979 - 14575052
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||| ||||||  |||||| |||||||||||||| | ||||||||| || |  |||| |||||||||||    
T  14574979 aaaaaacaaatttttaggtacattaaataattaatgtatctgaccaataaacgttattggatacattaattatt 14575052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 15996137 - 15996210
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||| ||||||  |||||| |||||||||||||| | ||| ||||| ||||  |||| |||||||||||    
T  15996137 aaaaaacaattttttaggtacattgaataattaatgtatctgacctataaacgtgattggatacattaattatt 15996210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17801508 - 17801463
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    ||||| ||||||||||||||||| || |||| ||||||||||||||    
T  17801508 tataatcaaaaaacaactttttagattcattgaataattaatgtat 17801463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 15996241 - 15996197
Alignment:
Q  2 ataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    ||||||||||||||  |||||| ||||||| ||||||||||||||    
T  15996241 ataagcaaaaaacacttttttagatacattgaataattaatgtat 15996197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 40992745 - 40992825
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||  | ||||||  |||||| |||||||||||||  | ||  |||||||||||| ||| |||||||||||    
T  40992745 tataagcaaaaaagcaatttttaggtacattaaataattaatgtacatgacttataaatgtgaccagatgcattaattatt 40992825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38562140 - 38562220
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||| |  || |||||||||||||||| |||||||||||    
T  38562140 tataagcaaaaaacaacttgttagatacattgaataattaatgtatatgtcctataaatgtgaccggatacattaattatt 38562220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 10065080 - 10065160
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||| ||||  |||||| ||  ||||| |||||||||||    
T  10065080 tataagcaaaaaacaactttttaggtacatccaataattaatgtatctaactcataaatatggtcggatacattaattatt 10065160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 52840282 - 52840361
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||| || ||||||| |||||| |||||||||||||| ||||  |||||||||||| ||| |||||||||||    
T  52840282 tataagcaaaaaataattttttaagtacattaaataattaatgtatctaacatataaatgtgacc-gatacattaattatt 52840361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 17236211 - 17236164
Alignment:
Q  33 aataattaatgtatttaaccaataaatgtgaccggatccattaattat 80  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  17236211 aataattaatgtatttaacctataaatgtgaccggatacattaattat 17236164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 6372041 - 6371961
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||||| ||||||  |||||| ||||| |||||||| ||||| |||||||| |||  || |||||||||||    
T  6372041 tataagcaaaaaacaattttttaggtacatttaataactaatgtatctaacccataaatgtaaccatatacattaattatt 6371961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33004185 - 33004232
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtattt 48  Q
    |||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  33004185 tataagcaaaaaacaactttttaaattcattaaataaataatgtattt 33004232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 54918984 - 54919039
Alignment:
Q  26 tacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||||||||||| ||||| ||||| |||||||||| ||||| |||||    
T  54918984 tacattcaataattaatgtatctaacctataaacgtgaccggatacattagttatt 54919039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 52378695 - 52378773
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    |||||||||||||||| ||| || ||||||||||||||| ||||  |||||||||| |  || ||||||||||| ||||    
T  52378695 aaaaaacaactttttagatatatccaataattaatgtatctaactcataaatgtgatcaaatacattaattattcaata 52378773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38562252 - 38562207
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||||    
T  38562252 tataagcaaaaaacaattttttagatacattgaataattaatgtat 38562207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 44626523 - 44626438
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    |||||||||||||  |||||||||||| ||| |||||| ||||||| ||||| || |||||||||  ||  |||||||||| ||||    
T  44626523 tataagcaaaaaatgactttttaaatatattgaataatcaatgtatctaacctatgaatgtgaccacataaattaattattcaata 44626438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 20783815 - 20783735
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||| |||||| || ||||||  ||||| |||||||||||||||||||   |||||||||| | ||| |||||||||||    
T  20783815 tataagtaaaaaataattttttaggtacatccaataattaatgtatttaatacataaatgtgatcagatacattaattatt 20783735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8311363 - 8311322
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaat 42  Q
    |||||||||||| ||||||||||||| |||||||||| ||||    
T  8311363 tataagcaaaaatcaactttttaaattcattcaataaataat 8311322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 8679062 - 8678989
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||| || ||||||  |||||| ||||  |||||||| ||||  |||||||||||||||| |||||||||||    
T  8679062 aaaaaataattttttaggtacattgaatacctaatgtatctaacatataaatgtgaccggatacattaattatt 8678989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 20291796 - 20291841
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||||||||||||||||||||| || ||| ||||| ||||||||    
T  20291796 tataagcaaaaaacaactttttaagtatattaaataactaatgtat 20291841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 23673482 - 23673402
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||||||| |||||||||  || ||| |||||||||||||| | ||  ||| ||||||||  || |||||||||||    
T  23673482 tataagcaaaaaataactttttaggtatattgaataattaatgtatctgacatatatatgtgaccaaatacattaattatt 23673402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39993168 - 39993120
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtattta 49  Q
    |||||| |||||| ||||||||| || |||| |||||||||||||||||    
T  39993168 tataagtaaaaaataactttttagattcattgaataattaatgtattta 39993120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 43445052 - 43445124
Alignment:
Q  9 aaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||||  || |||||||||||||||||| ||||| |||||||||||||||| |||||||||||    
T  43445052 aaaaacaactttttaggtatattcaataattaatgtatctaacccataaatgtgaccggatacattaattatt 43445124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41517378 - 41517458
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||| ||||||||||  ||||| ||| ||||||||||| ||||| |||||||||| ||||| |||||||||||    
T  41517378 tataagcaaaaaccaactttttaggtacatccaagaattaatgtatctaacccataaatgtgatcggatacattaattatt 41517458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 11565015 - 11565099
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaat 85  Q
    ||||||||||||||||| ||||| ||||||| |||||||||||||  | | | ||||||||||| |||| |||||| ||||||||    
T  11565015 tataagcaaaaaacaacattttagatacattgaataattaatgtacctgatctataaatgtgactggatacattaaatattgaat 11565099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 14725225 - 14725305
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||| ||||||||||||||||| ||||||  |||||||||||||| ||||  |||||| ||| ||||| |||||||||||    
T  14725225 tataaacaaaaaacaactttttagatacatctaataattaatgtatctaactcataaatctgatcggatacattaattatt 14725305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29168626 - 29168562
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgacc 65  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||| | ||  ||||||||||||    
T  29168626 tataagcaaaaaataactttttaaatacattaaataattaatgtatcttacttataaatgtgacc 29168562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 33956412 - 33956332
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||| |||||| || |||||| ||| ||| |||||||||||||| ||||  |||||| ||||||||| |||||||||||    
T  33956412 tataagaaaaaaataaatttttagatatattgaataattaatgtatctaacttataaatatgaccggatacattaattatt 33956332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 36472117 - 36472177
Alignment:
Q  5 agcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgacc 65  Q
    ||||||||| || ||||||| ||||| ||||||||||||||| ||||| ||||||||||||    
T  36472117 agcaaaaaataattttttaagtacatccaataattaatgtatataacccataaatgtgacc 36472177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 30429083 - 30429128
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||||||||||||||||||||  | |||||||||||||||||||    
T  30429083 tataagcaaaaaacaactttttaggttcattcaataattaatgtat 30429128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41517490 - 41517445
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||||    
T  41517490 tataagcaaaaaataactttttaagtacattgaataattaatgtat 41517445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 9895677 - 9895597
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaa----taattaatgtatttaaccaataaatgtgaccggatccattaat 77  Q
    |||||||||| |||||||||||| ||||||| ||    |||||||||||| ||||| |||||||||||  ||| |||||||    
T  9895677 tataagcaaacaacaactttttagatacattaaataattaattaatgtatctaacctataaatgtgactagatacattaat 9895597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19268074 - 19268122
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtattta 49  Q
    |||||||||||| ||||||||||| | |||||||||| | |||||||||    
T  19268074 tataagcaaaaatcaactttttaagttcattcaataaatgatgtattta 19268122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 19522539 - 19522594
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtga 63  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  19522539 aaaaaacaactttttaaatacattcaataattaatgtatctaacccataaatgtga 19522594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 14509842 - 14509920
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||| |||  |||| ||||||||||| ||||    
T  14509842 aaaaaacaactttttaagtacattcaataattaatgtatttaactcataaatatgattggatacattaattattcaata 14509920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 8355668 - 8355585
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaatacattt 91  Q
    |||||||||||||||||||||| | ||||||||||||||  |||  |||||||||| ||||| ||||||||||| |||| ||||    
T  8355668 aaaaaacaactttttaaatacaatgaataattaatgtatccaacatataaatgtgatcggatacattaattatttaatatattt 8355585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 14751251 - 14751171
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||||||||||||  |||||| |||| || |||||| ||||| |||||||| || |||| |||||||||||    
T  14751251 tataagcaaaaaacaactttttaggtacattgaatagttgatgtatctaacctataaatgtaactggatacattaattatt 14751171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7065711 - 7065666
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||||||||| ||||||||||||| |||| ||||||||||||||    
T  7065711 tataagcaaaaatcaactttttaaattcattgaataattaatgtat 7065666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 28499901 - 28499828
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||| ||||||||| ||| ||| |||||||||||||||||| | |||| | ||||||||| ||||| |||||    
T  28499901 aaaaaataactttttagatatattgaataattaatgtatttaatctataattatgaccggatacattagttatt 28499828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 30046328 - 30046401
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||| ||| |||| ||| ||| |||| ||||||||| ||||| ||||||||| |||||| |||||||||||    
T  30046328 aaaaaactactctttagatatattgaatagttaatgtatctaacctataaatgtggccggatacattaattatt 30046401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 32522654 - 32522569
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    ||||| ||||||| |  |||||||||||||| |||||||||||||| | | | ||||||||||| | || ||||||||||| ||||    
T  32522654 tataatcaaaaaatagttttttaaatacattgaataattaatgtatctgatctataaatgtgactgcatacattaattattcaata 32522569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20269568 - 20269521
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtattt 48  Q
    ||||| |||||||||| |||||| ||||||| ||||||||||||||||    
T  20269568 tataaacaaaaaacaattttttagatacattgaataattaatgtattt 20269521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 15712247 - 15712213
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaat 35  Q
    |||||||||||| ||||||||||||||||||||||    
T  15712247 tataagcaaaaatcaactttttaaatacattcaat 15712213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 31146769 - 31146719
Alignment:
Q  31 tcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||| ||||| ||||||| |||||||| ||||| |||||||||||    
T  31146769 tcaataattattgtatctaaccaaaaaatgtgatcggatacattaattatt 31146719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28351070 - 28351025
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    ||||||||||||||||||||||| || |||| ||||| ||||||||    
T  28351070 tataagcaaaaaacaactttttagattcattgaataactaatgtat 28351025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 14958968 - 14958924
Alignment:
Q  2 ataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||||||||||| |||||||||| |||| ||||| ||||||||    
T  14958968 ataagcaaaaaacatctttttaaattcattgaataactaatgtat 14958924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 26296230 - 26296303
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||||||||||||| |||||||||||||||||| | ||||||||||| | || | |||||||||    
T  26296230 aaaaaacaactttttaaatacattaaataattaatgtatttaatctataaatgtgactgtatacgttaattatt 26296303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 16260644 - 16260722
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    ||||||||||||||||  |||||| |||||||||||| | ||||| ||||||||||| | || ||||||||||| ||||    
T  16260644 aaaaaacaactttttatctacattgaataattaatgtctctaacctataaatgtgactgaatacattaattattcaata 16260722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5069954 - 5069999
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5069954 tataagcaaaaaacaactttttagatacattgaataattaatgtat 5069999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 862947 - 862880
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggat 69  Q
    |||||||||||||||  |||||| ||||||| |||||||||||||| ||||| ||||||||||| ||||    
T  862947 tataagcaaaaaacat-tttttagatacattgaataattaatgtatctaacctataaatgtgactggat 862880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 9910516 - 9910593
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    ||||||||| |||||| | | ||| |||||||||||||| ||||| ||||| |||||||||| ||||||||||| ||||    
T  9910516 aaaaaacaattttttagaaatattgaataattaatgtatctaacctataaa-gtgaccggatacattaattattcaata 9910593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 24253007 - 24252927
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    ||||||||||||| |||||||||  |||||| ||||||||||||||     | ||||||||||||| || ||||||||||| ||||    
T  24253007 tataagcaaaaaataactttttaggtacattgaataattaatgtat-----ctataaatgtgaccgaatacattaattattcaata 24252927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8050992 - 8051054
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtga 63  Q
    ||||| ||||||| || |||||||||| ||| |||||||||||||| ||| | ||||||||||    
T  8050992 tataaccaaaaaataattttttaaatatattgaataattaatgtatataatctataaatgtga 8051054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14093095 - 14093140
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    |||||| ||||  |||||||||||||||||| ||||||||||||||    
T  14093095 tataagaaaaactcaactttttaaatacattaaataattaatgtat 14093140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 16867744 - 16867664
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||||||||||||||||||  ||||| |||||||| |||||| ||||| |||||| |||||| || ||||| |||||    
T  16867744 tataagcaaaaaacaactttttaggtacatccaataattgatgtatctaacccataaatatgaccgaatgcattagttatt 16867664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 301
Target Start/End: Original strand, 33232027 - 33232092
Alignment:
Q  236 tatagaggcatcacaatgtcggcacgtatactcatagttctatgcctaaaatggtaaaatctgatg 301  Q
    |||||||||||||||| ||| |||| || ||||||| |||||||||||||| || |||||||||||    
T  33232027 tatagaggcatcacaaagtcagcacttacactcataattctatgcctaaaaaggcaaaatctgatg 33232092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 10938016 - 10937933
Alignment:
Q  8 aaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaatacattt 91  Q
    ||||||||||||||||| || || ||||||||||| ||| ||| | |||||||||||| |||  |||||||||| |||| ||||    
T  10938016 aaaaaacaactttttaagtatatccaataattaatatatctaatctataaatgtgacccgatatattaattattcaatatattt 10937933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 18093792 - 18093837
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtat 46  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||    
T  18093792 tataaacaaaaaacaaatttttaaatacattgaataattaatgtat 18093837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 29212969 - 29212884
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattattgaata 86  Q
    ||||||||||||||   ||||||  |||||| |||||||||||||| | ||| ||||||||||| |||| |||| |||||| ||||    
T  29212969 tataagcaaaaaactgttttttaggtacattgaataattaatgtatctgacctataaatgtgactggatacattgattattcaata 29212884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18093904 - 18093824
Alignment:
Q  1 tataagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    ||||||||| |||||| ||||||  |  ||| |||||||||||||| | ||| |||||||||||  ||| |||||||||||    
T  18093904 tataagcaataaacaagtttttaggtttattgaataattaatgtatctgacctataaatgtgacaagatacattaattatt 18093824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 4729 - 4806
Alignment:
Q  4 aagcaaaaaacaactttttaaatacattcaataattaatgtatttaaccaataaatgtgaccggatccattaattatt 81  Q
    |||||||| |||||||||||||| |||| ||||| |||||||||| |   |||||||||||  ||| |||||||||||    
T  4729 aagcaaaacacaactttttaaattcattgaataactaatgtatttgatatataaatgtgactagatacattaattatt 4806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University