View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_low_48 (Length: 337)
Name: NF20730_low_48
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_48 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 95 - 316
Target Start/End: Complemental strand, 44976247 - 44976031
Alignment:
| Q |
95 |
gtgagtttaatctcatctaaaggaaaaacctcaaggttcatagtgttgcttatagagctacttacataatataatatccatcaacaaagtttttatacca |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44976247 |
gtgagtttaatctcatctaaaggaaaaacctcaaggttcatagtgttgcttatagagctacttacataatat-----ccatcaacaaagtttttatacca |
44976153 |
T |
|
| Q |
195 |
gctataaattaatatcacaattatctcttttgaattagaagttttaatattagatttattagtaggtaggttcacaaatgaataagattagtaagtactg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44976152 |
gctataaattaatatcacaattatctctttttaattagaagttttaatattagatttattagtaggtaggttcacaaatgaataagattagtaagtactg |
44976053 |
T |
|
| Q |
295 |
tttaccttttcattataatgca |
316 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
44976052 |
tgtaccttttcattataatgca |
44976031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 44976373 - 44976294
Alignment:
| Q |
15 |
atactttcacccaccaaaccctccaaatcagttcacaataatcaaatggagcctaccttactgatcctcctactcctggc |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44976373 |
atactttcacccaccaaaccctccaaatcagttcacaataatcaaatggagcctaccttactgaccctcctactcctggc |
44976294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University