View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_50 (Length: 322)

Name: NF20730_low_50
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_50
NF20730_low_50
[»] chr8 (21 HSPs)
chr8 (7-311)||(14109544-14109847)
chr8 (128-311)||(32966700-32966883)
chr8 (36-121)||(21544266-21544351)
chr8 (36-124)||(21544004-21544092)
chr8 (42-121)||(21544525-21544604)
chr8 (60-120)||(14112874-14112934)
chr8 (14-127)||(8816418-8816531)
chr8 (49-124)||(42001666-42001741)
chr8 (128-190)||(35971962-35972024)
chr8 (14-119)||(14112748-14112852)
chr8 (49-124)||(27642541-27642616)
chr8 (49-119)||(2809090-2809160)
chr8 (49-115)||(42000771-42000837)
chr8 (66-114)||(8815795-8815843)
chr8 (60-119)||(21543410-21543469)
chr8 (57-116)||(27641672-27641731)
chr8 (60-119)||(28427726-28427785)
chr8 (65-116)||(40678137-40678188)
chr8 (68-119)||(42001025-42001076)
chr8 (67-117)||(41396714-41396764)
chr8 (143-187)||(2706836-2706880)
[»] chr6 (15 HSPs)
chr6 (14-124)||(4221764-4221874)
chr6 (14-120)||(33203291-33203397)
chr6 (17-119)||(4222584-4222686)
chr6 (14-120)||(26837979-26838085)
chr6 (44-124)||(9904520-9904600)
chr6 (17-119)||(26839079-26839181)
chr6 (49-124)||(22018585-22018660)
chr6 (49-119)||(22019459-22019529)
chr6 (124-190)||(26420730-26420796)
chr6 (42-119)||(12776245-12776322)
chr6 (60-119)||(22019223-22019282)
chr6 (60-119)||(4222449-4222508)
chr6 (65-119)||(9903880-9903934)
chr6 (128-191)||(14799744-14799808)
chr6 (43-87)||(33202418-33202462)
[»] chr4 (26 HSPs)
chr4 (14-119)||(33437509-33437614)
chr4 (49-124)||(11014463-11014538)
chr4 (49-123)||(9617372-9617446)
chr4 (16-119)||(33436270-33436373)
chr4 (49-124)||(38194409-38194484)
chr4 (57-124)||(50910364-50910431)
chr4 (17-119)||(33437729-33437830)
chr4 (35-116)||(31433631-31433712)
chr4 (37-114)||(46641466-46641543)
chr4 (56-124)||(35143856-35143924)
chr4 (49-116)||(38193513-38193580)
chr4 (49-119)||(40732308-40732378)
chr4 (60-119)||(50911015-50911074)
chr4 (49-119)||(9618272-9618342)
chr4 (49-119)||(35142974-35143044)
chr4 (65-117)||(40731429-40731481)
chr4 (60-119)||(9618033-9618092)
chr4 (60-119)||(38193762-38193821)
chr4 (60-119)||(40732067-40732126)
chr4 (126-173)||(53732176-53732223)
chr4 (49-119)||(11015373-11015442)
chr4 (42-120)||(31432740-31432818)
chr4 (49-119)||(50911265-50911335)
chr4 (131-180)||(5827514-5827563)
chr4 (80-113)||(50911114-50911147)
chr4 (49-100)||(41534824-41534876)
[»] chr3 (17 HSPs)
chr3 (14-119)||(17074544-17074649)
chr3 (44-122)||(45265598-45265676)
chr3 (49-122)||(54921538-54921611)
chr3 (49-120)||(47641128-47641199)
chr3 (49-124)||(48097504-48097579)
chr3 (49-119)||(48098001-48098071)
chr3 (49-119)||(54922427-54922497)
chr3 (49-116)||(45266352-45266419)
chr3 (49-116)||(47642637-47642704)
chr3 (127-182)||(21980566-21980621)
chr3 (127-182)||(22002997-22003052)
chr3 (60-119)||(47641783-47641842)
chr3 (65-114)||(17074310-17074359)
chr3 (60-113)||(45266264-45266317)
chr3 (135-178)||(21219512-21219555)
chr3 (131-182)||(27948350-27948401)
chr3 (65-119)||(54922194-54922248)
[»] chr5 (41 HSPs)
chr5 (49-124)||(2898114-2898189)
chr5 (18-119)||(21038954-21039055)
chr5 (56-124)||(17644902-17644970)
chr5 (49-120)||(8213601-8213672)
chr5 (49-124)||(12936420-12936495)
chr5 (49-124)||(12950575-12950650)
chr5 (49-124)||(16931093-16931168)
chr5 (128-271)||(18924390-18924535)
chr5 (49-119)||(8214178-8214248)
chr5 (42-124)||(27809594-27809676)
chr5 (44-124)||(22964824-22964904)
chr5 (44-124)||(42057390-42057470)
chr5 (44-119)||(1818903-1818978)
chr5 (49-119)||(22965601-22965671)
chr5 (44-124)||(28109393-28109473)
chr5 (49-95)||(2401592-2401638)
chr5 (49-119)||(12951478-12951548)
chr5 (44-124)||(30471256-30471336)
chr5 (14-101)||(6807786-6807873)
chr5 (60-119)||(16930469-16930528)
chr5 (60-119)||(17646288-17646347)
chr5 (60-114)||(12937071-12937125)
chr5 (49-119)||(12937315-12937385)
chr5 (60-114)||(12951234-12951288)
chr5 (128-190)||(41196304-41196366)
chr5 (128-177)||(1014174-1014223)
chr5 (206-271)||(29372211-29372276)
chr5 (67-119)||(2898726-2898778)
chr5 (131-191)||(35471624-35471684)
chr5 (60-116)||(41473314-41473370)
chr5 (60-119)||(18966664-18966723)
chr5 (36-91)||(21038108-21038163)
chr5 (49-116)||(39940096-39940163)
chr5 (60-119)||(42056822-42056881)
chr5 (201-271)||(7509662-7509732)
chr5 (49-119)||(42056569-42056639)
chr5 (68-113)||(12937238-12937283)
chr5 (68-113)||(12951401-12951446)
chr5 (59-124)||(21098363-21098428)
chr5 (67-119)||(2898940-2898992)
chr5 (67-119)||(28108754-28108806)
[»] chr1 (21 HSPs)
chr1 (49-118)||(51935553-51935622)
chr1 (14-119)||(45423142-45423247)
chr1 (14-124)||(48899003-48899110)
chr1 (49-122)||(34814645-34814718)
chr1 (50-116)||(7998348-7998414)
chr1 (49-119)||(34815519-34815589)
chr1 (49-119)||(51936454-51936524)
chr1 (17-113)||(45423014-45423110)
chr1 (127-182)||(4108712-4108767)
chr1 (49-124)||(7999213-7999288)
chr1 (60-119)||(51936213-51936272)
chr1 (126-253)||(48911958-48912086)
chr1 (44-115)||(48899763-48899835)
chr1 (44-99)||(25484262-25484317)
chr1 (60-119)||(34815281-34815340)
chr1 (201-271)||(4108620-4108690)
chr1 (128-190)||(16263998-16264060)
chr1 (15-120)||(47357294-47357399)
chr1 (56-124)||(6131417-6131485)
chr1 (60-116)||(7998602-7998658)
chr1 (128-180)||(40042888-40042940)
[»] chr2 (24 HSPs)
chr2 (44-120)||(36583465-36583541)
chr2 (65-124)||(31532-31591)
chr2 (49-124)||(44655469-44655544)
chr2 (49-119)||(36584308-36584378)
chr2 (44-124)||(40439989-40440069)
chr2 (49-124)||(44328693-44328768)
chr2 (49-127)||(31298685-31298763)
chr2 (127-180)||(8962217-8962270)
chr2 (60-119)||(10601757-10601816)
chr2 (56-123)||(15629433-15629500)
chr2 (49-116)||(44656413-44656480)
chr2 (49-119)||(15630301-15630371)
chr2 (49-119)||(31297802-31297872)
chr2 (49-119)||(44329567-44329637)
chr2 (49-113)||(6172942-6173006)
chr2 (60-119)||(44329331-44329390)
chr2 (57-95)||(3260101-3260139)
chr2 (137-175)||(7355064-7355102)
chr2 (68-119)||(6172859-6172910)
chr2 (128-191)||(23988561-23988624)
chr2 (69-119)||(3260026-3260076)
chr2 (60-114)||(44656130-44656184)
chr2 (80-124)||(6172233-6172277)
chr2 (75-119)||(34414932-34414976)
[»] chr7 (25 HSPs)
chr7 (68-124)||(22929043-22929099)
chr7 (49-119)||(25694202-25694272)
chr7 (128-182)||(35240593-35240647)
chr7 (44-101)||(25695045-25695102)
chr7 (44-124)||(31602777-31602858)
chr7 (131-180)||(32838202-32838251)
chr7 (58-119)||(48556760-48556821)
chr7 (60-119)||(6038060-6038120)
chr7 (49-124)||(14815490-14815565)
chr7 (49-124)||(15262485-15262560)
chr7 (128-191)||(37997834-37997897)
chr7 (128-190)||(2946755-2946817)
chr7 (127-191)||(1503279-1503343)
chr7 (128-191)||(6483803-6483866)
chr7 (204-271)||(26048886-26048953)
chr7 (60-119)||(31602132-31602191)
chr7 (60-119)||(48556517-48556576)
chr7 (131-161)||(2704814-2704844)
chr7 (60-114)||(25694459-25694513)
chr7 (56-113)||(25694304-25694361)
chr7 (80-113)||(47610325-47610358)
chr7 (67-119)||(23939076-23939128)
chr7 (44-96)||(35248855-35248907)
chr7 (127-191)||(46409296-46409359)
chr7 (67-119)||(47610390-47610442)
[»] scaffold0055 (7 HSPs)
scaffold0055 (56-124)||(35378-35446)
scaffold0055 (56-89)||(19893-19926)
scaffold0055 (56-89)||(34289-34322)
scaffold0055 (56-89)||(43093-43126)
scaffold0055 (56-89)||(53461-53494)
scaffold0055 (56-89)||(55807-55840)
scaffold0055 (56-89)||(74479-74512)
[»] scaffold0004 (2 HSPs)
scaffold0004 (56-116)||(127345-127405)
scaffold0004 (67-119)||(127590-127642)
[»] scaffold0021 (5 HSPs)
scaffold0021 (56-91)||(95680-95715)
scaffold0021 (56-89)||(39146-39179)
scaffold0021 (56-89)||(40612-40645)
scaffold0021 (56-89)||(49084-49117)
scaffold0021 (56-89)||(50151-50184)
[»] scaffold0040 (1 HSPs)
scaffold0040 (131-165)||(69610-69644)
[»] scaffold0515 (1 HSPs)
scaffold0515 (56-89)||(10791-10824)
[»] scaffold0152 (1 HSPs)
scaffold0152 (56-89)||(18360-18393)
[»] scaffold0052 (5 HSPs)
scaffold0052 (56-89)||(3775-3808)
scaffold0052 (56-89)||(18300-18333)
scaffold0052 (56-89)||(30204-30237)
scaffold0052 (56-89)||(41791-41824)
scaffold0052 (56-89)||(53413-53446)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 14109847 - 14109544
Alignment:
Q  7 ttgctgttggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacg 106  Q
    |||| ||||||||||||||| |||| |||||||| |||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14109847 ttgcagttggctttgctgcacttaattgaagttccagttttgattttacgcgtttcgatcgaaaaatcaaaatgaatcgaaacttattcgaaattttacg 14109748  T
Q  107 aaactttacagaccctctttaggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacatt-aaacaagactgannnnnnnnngtata 205  Q
    ||||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||  |||||||||||| ||| ||||||||         |||||    
T  14109747 aaactttacagactctctttaggcgccatttctggtaggagacttgaataggtctcctacagtaggagacattaaaaaaagactga--tttttttgtata 14109650  T
Q  206 acaaaaatggcatgtgtaaccattaaaatgatgaagaacattgatcttgttataatccctccacaccttaaacatatcatttctctcttcctctggcttt 305  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||  |||| |||||||| ||||||||||||||||  |||    
T  14109649 acaaaaatggcatgtgtaaccattaaaatgatgaagaacactgatcttgttataatctctccattcctttaacatatcctttctctcttcctctgaattt 14109550  T
Q  306 ctctct 311  Q
    ||||||    
T  14109549 ctctct 14109544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 128 - 311
Target Start/End: Complemental strand, 32966883 - 32966700
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactgannnnnnnnngtataacaaaaatggcatgtgtaacca 227  Q
    |||||||||||  |||||||||||||||||||||||||||||| ||||||||||| |||| |||         ||| |||||||||| ||||||||||||    
T  32966883 ggcgccgtttctcgtaggagacttaaataggtctcctatggtatgagacattaaaaaagattgaatattttttgtacaacaaaaatgacatgtgtaacca 32966784  T
Q  228 ttaaaatgatgaagaacattgatcttgttataatccctccacaccttaaacatatcatttctctcttcctctggctttctctct 311  Q
    |||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  32966783 ttaaaatgatgaagaacactgatcttataataatccatccacaccttaaacatatcctttctctcttcctctgactttctctct 32966700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 21544351 - 21544266
Alignment:
Q  36 agttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccc 121  Q
    ||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21544351 agttccagttgtgattttacgcgtttcgatcgaaatatcaaaataaatcgaaacttattcggaattttacgaaactttacagaccc 21544266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 21544092 - 21544004
Alignment:
Q  36 agttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    ||||| |||||| |||||| | ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21544092 agttccagttgtgattttacgtgtttcgatcgaaatatcaaaataaatcgaaacttattcggaattttacgaaactttacagaccctct 21544004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 42 - 121
Target Start/End: Complemental strand, 21544604 - 21544525
Alignment:
Q  42 agttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccc 121  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21544604 agttgtgattttacgcgtttcgatcgaaatatcaaaataaatcgaaacttattcaaaattttacgaaactttacagaccc 21544525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 14112934 - 14112874
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagacc 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14112934 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagacc 14112874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 8816531 - 8816418
Alignment:
Q  14 tggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    ||||||||||||| ||||||| | ||  |||||| |||||| |||||||| ||||||||||||||||||| |||||||||||  |||| |||||||||||    
T  8816531 tggctttgctgcacttaagtgcactttcagttgtgattttacgcgtttcggtcgaaaaatcaaaataaattgaaacttattcagaattctacgaaacttt 8816432  T
Q  114 acagaccctcttta 127  Q
    ||| ||| ||||||    
T  8816431 acaaaccatcttta 8816418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 42001741 - 42001666
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||| | |||||||||||||||||||||||| ||||||  |||| |||||||||||||||| |||||    
T  42001741 attttacgcgttttggtcgaaaaatcaaaataaatcgaaaattattcagaattctacgaaactttacagatcctct 42001666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 190
Target Start/End: Complemental strand, 35972024 - 35971962
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactg 190  Q
    ||||||||||  |||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  35972024 ggcgccgtttatggtaggagacttgaataggtctcctacggtaggagacattaaaaaagactg 35971962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 14112748 - 14112852
Alignment:
Q  14 tggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    ||||||||||||| ||||||| | ||| |||| | | ||| ||| |||| || |||||||||||||||||||||||||||| |  |||||||||||||||    
T  14112748 tggctttgctgcacttaagtgcaattctagttctgaatttgtgcatttctattgaaaaatcaaaataaatcgaaacttatttg-gattttacgaaacttt 14112846  T
Q  114 acagac 119  Q
    | ||||    
T  14112847 atagac 14112852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 27642616 - 27642541
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| | |||||| ||||||||| |||||||||| |||||||||   |||| ||||||| ||||||||||||||    
T  27642616 attttacgtgtttcggtcgaaaaattaaaataaatcaaaacttatttagaattctacgaaattttacagaccctct 27642541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 2809160 - 2809090
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| ||| |||||||| ||||    
T  2809160 attttaagcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacaaaactttatagac 2809090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 42000771 - 42000837
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttac 115  Q
    |||||| |||||||  |||||||||||||||||||| ||| ||||||  |||| |||||||||||||    
T  42000771 attttacgcgtttcagtcgaaaaatcaaaataaatcaaaatttattcagaattctacgaaactttac 42000837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 8815843 - 8815795
Alignment:
Q  66 cgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttta 114  Q
    ||||||||||||||||||||| ||||| |||||||  ||||||||||||    
T  8815843 cgaaaaatcaaaataaatcgagacttagtcgaaatgctacgaaacttta 8815795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 21543469 - 21543410
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||   ||||||||||| ||||    
T  21543469 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgcaacgaaactttatagac 21543410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 27641672 - 27641731
Alignment:
Q  57 cgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    ||||||| | |||||||||||||||||||||| ||||||  |||| ||||| ||||||||    
T  27641672 cgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacgacactttaca 27641731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 28427726 - 28427785
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| ||| |||  ||| |||||||||||||    
T  28427726 ttcggtcgaaaaatcaaaataaatcgagacttagtcgtaatgctacaaaactttacagac 28427785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 40678188 - 40678137
Alignment:
Q  65 tcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||||||||||||||||||| ||| ||||||  |||||||||||| ||||||    
T  40678188 tcgaaaaatcaaaataaatcaaaatttattcagaattttacgaaattttaca 40678137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 42001076 - 42001025
Alignment:
Q  68 aaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    ||||||||||||||||||| ||||| |||||||  |||||||||||| ||||    
T  42001076 aaaaatcaaaataaatcgagacttagtcgaaatgctacgaaactttatagac 42001025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 41396714 - 41396764
Alignment:
Q  67 gaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacag 117  Q
    |||||||||||| ||||||| ||||| || ||||||||| |||||||||||    
T  41396714 gaaaaatcaaaacaaatcgagacttagtcaaaattttacaaaactttacag 41396764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 2706836 - 2706880
Alignment:
Q  143 aggagacttaaataggtctcctatggtaggagacattaaacaaga 187  Q
    ||||||||| ||||||||||| | |||||||||||||||| ||||    
T  2706836 aggagacttgaataggtctcccacggtaggagacattaaaaaaga 2706880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 4221764 - 4221874
Alignment:
Q  14 tggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    ||||||||||||| ||||||| ||||| | |||| |||||| ||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||    
T  4221764 tggctttgctgcacttaagtgcagttctacttgtgattttacgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcagaattctacgaaacttt 4221863  T
Q  114 acagaccctct 124  Q
    |||||||||||    
T  4221864 acagaccctct 4221874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 33203397 - 33203291
Alignment:
Q  14 tggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    |||||||| |||| ||||||| ||||  || ||  ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  33203397 tggctttgttgcacttaagtgcagtttcaggtgagattttatgcgtttcgttcgaaaaataaaaataaatcgaaacttattcaaaattctacgaaacttt 33203298  T
Q  114 acagacc 120  Q
    |||||||    
T  33203297 acagacc 33203291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 4222686 - 4222584
Alignment:
Q  17 ctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||||||||| ||||||| ||||  |||||| ||||||  ||||||| |||||||||||||||||||||||||||||||  |||| || |||||||||||    
T  4222686 ctttgctgcacttaagtgcagtttcagttgtgattttacacgtttcggtcgaaaaatcaaaataaatcgaaacttattcagaattctatgaaactttaca 4222587  T
Q  117 gac 119  Q
    |||    
T  4222586 gac 4222584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 26837979 - 26838085
Alignment:
Q  14 tggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    ||||||||||||| ||||||  ||||| | |||| |||||| |||||||| |||||| ||||||||||||||||||||||||  |||| | |||||||||    
T  26837979 tggctttgctgcacttaagtccagttctaattgtgattttacgcgtttcggtcgaaatatcaaaataaatcgaaacttattcataattctgcgaaacttt 26838078  T
Q  114 acagacc 120  Q
    |||||||    
T  26838079 acagacc 26838085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 9904600 - 9904520
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||| |||||| |||||||| ||||||||||||||||||||||||| |||||  |||| ||||||||||||||||||||||    
T  9904600 ttgtgattttacgcgtttcggtcgaaaaatcaaaataaatcgaaacatattcagaattctacgaaactttacagaccctct 9904520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 26839181 - 26839079
Alignment:
Q  17 ctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||||||||| ||||||| ||||| |||| | | |||| |||||||| |||||||||||||||||||||||||  ||||  |||| ||||||||||||||    
T  26839181 ctttgctgcacttaagtgcagttccagttttgactttacgcgtttcgttcgaaaaatcaaaataaatcgaaacccattcagaattatacgaaactttaca 26839082  T
Q  117 gac 119  Q
    |||    
T  26839081 gac 26839079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 22018585 - 22018660
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||||  |||| |||||||||| ||| |||||||    
T  22018585 attttacgcgtttcggtcgaaaaatcaacataaatcgaaacttattcagaattctacgaaacttcacaaaccctct 22018660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 22019529 - 22019459
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | ||||||||||||||||| |||| ||||||  |||| |||||||||||||||||    
T  22019529 attttacgcgtttcggtagaaaaatcaaaataaatagaaagttattcagaattctacgaaactttacagac 22019459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 26420796 - 26420730
Alignment:
Q  124 tttaggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactg 190  Q
    ||||||||||||||  |||||||||||| ||||||||||| | ||||||||||| |||| |||||||    
T  26420796 tttaggcgccgtttatggtaggagacttgaataggtctcccacggtaggagacaataaaaaagactg 26420730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 12776245 - 12776322
Alignment:
Q  42 agttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| ||||||  ||||| |||||||||||||||||||||||||| ||||||  |||| ||| ||| |||||||||    
T  12776245 agttgtgattttacacgttttgatcgaaaaatcaaaataaatcgaaatttattcagaattctacaaaattttacagac 12776322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 22019223 - 22019282
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||  |||||||||||| ||||    
T  22019223 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgctacgaaactttatagac 22019282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 4222449 - 4222508
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||  ||| |||||||| ||||    
T  4222449 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatggtacaaaactttatagac 4222508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 9903934 - 9903880
Alignment:
Q  65 tcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||||||||||||||||||| | ||| || |||| ||||||||||||| ||||    
T  9903934 tcgaaaaatcaaaataaatcgagatttagtcaaaatattacgaaactttatagac 9903880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 14799744 - 14799808
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggt-ctcctatggtaggagacattaaacaagactga 191  Q
    ||||||||||  |||||||||||| ||||||| |||| | || ||||||||||||| ||||||||    
T  14799744 ggcgccgtttatggtaggagacttgaataggtcctcccacgggaggagacattaaaaaagactga 14799808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 33202418 - 33202462
Alignment:
Q  43 gttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaa 87  Q
    ||||| |||||| ||| |||| |||||||||||||||||||||||    
T  33202418 gttgtgattttacgcgcttcggtcgaaaaatcaaaataaatcgaa 33202462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 33437614 - 33437509
Alignment:
Q  14 tggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    ||||||||||||| ||||||| ||||  |||||| |||||| |||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  33437614 tggctttgctgcacttaagtgcagtttcagttgtgattttacgcgtttcggtcgaaaaatcaaaataaattgaaacttattcaaaattctacgaaacttt 33437515  T
Q  114 acagac 119  Q
    | ||||    
T  33437514 atagac 33437509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 11014463 - 11014538
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  11014463 attttacgcgtttcagtcgaaaaatcaaaataaatcgaaacttattcagaattctacgaaactttacagaccctct 11014538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 9617372 - 9617446
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctc 123  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||  |||| ||||||| |||||||||||||    
T  9617372 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaacttattcagaattctacgaaaatttacagaccctc 9617446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 33436270 - 33436373
Alignment:
Q  16 gctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttac 115  Q
    ||||||||||| |||| || ||||| |||| | |||||| |||||||| |||||||||||||||||||| |||||||||   |||| ||||||||| |||    
T  33436270 gctttgctgcacttaaatgcagttccagttatgattttacgcgtttcggtcgaaaaatcaaaataaatcaaaacttattaataattctacgaaactatac 33436369  T
Q  116 agac 119  Q
    ||||    
T  33436370 agac 33436373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 38194484 - 38194409
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||  |||| ||| ||||||||||||||||||    
T  38194484 attttatgcgttttggtcgaaaaatcaaaataaattgaaacttattcagaattctacaaaactttacagaccctct 38194409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 50910364 - 50910431
Alignment:
Q  57 cgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    ||||||| |||||||||||||||||||||||| ||||||  |||| ||||||||||||||||||||||    
T  50910364 cgtttcggtcgaaaaatcaaaataaatcgaaatttattcagaattctacgaaactttacagaccctct 50910431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 33437830 - 33437729
Alignment:
Q  17 ctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    ||||||| || ||||||| ||||  |||||| |||||| |||||||| ||||||||||||||||||| ||||||| ||  ||||| |||||||||||| |    
T  33437830 ctttgctacacttaagtgcagtttcagttgtgattttacgcgtttcggtcgaaaaatcaaaataaattgaaactt-tttaaaattctacgaaactttata 33437732  T
Q  117 gac 119  Q
    |||    
T  33437731 gac 33437729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 116
Target Start/End: Complemental strand, 31433712 - 31433631
Alignment:
Q  35 aagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||| ||||  |||| || |||| ||||||    
T  31433712 aagttccagttgtgattttacgcgtttcgatcaaaaaatcaaaataaatcgaaactcattcagaattctatgaaattttaca 31433631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 37 - 114
Target Start/End: Complemental strand, 46641543 - 46641466
Alignment:
Q  37 gttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttta 114  Q
    ||||||||| | |||||| | |||||| || ||||||||||||||||||||||||||||| |||  ||||||||||||    
T  46641543 gttcaagttttgattttacgtgtttcggtcaaaaaatcaaaataaatcgaaacttattcggaatcctacgaaacttta 46641466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 35143924 - 35143856
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||||| | |||||||||||||||||||||||||||||  |||| ||||||| ||||||||| ||||    
T  35143924 gcgtttcggtggaaaaatcaaaataaatcgaaacttattcagaattctacgaaattttacagactctct 35143856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 38193513 - 38193580
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| ||||||||||||||    
T  38193513 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacgaaactttaca 38193580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 40732378 - 40732308
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| |||||||||||| ||||    
T  40732378 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacgaaactttatagac 40732308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 50911015 - 50911074
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||  |||||||||||| ||||    
T  50911015 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgctacgaaactttatagac 50911074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 9618342 - 9618272
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| || ||||||||| ||||    
T  9618342 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctaagaaactttatagac 9618272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 35142974 - 35143044
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | ||||||| |||||||||||||| ||||||  |||| |||||||||||| ||||    
T  35142974 attttacgcgtttcggtagaaaaattaaaataaatcgaaagttattcagaattctacgaaactttatagac 35143044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 40731429 - 40731481
Alignment:
Q  65 tcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacag 117  Q
    |||||||||||||||||||||||| ||||||  |||| |||||||| ||||||    
T  40731429 tcgaaaaatcaaaataaatcgaaatttattcagaattctacgaaacattacag 40731481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 9618033 - 9618092
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||  || ||||||||| ||||    
T  9618033 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgctaagaaactttatagac 9618092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 38193821 - 38193762
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||  | |||||||||| ||||    
T  38193821 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgcttcgaaactttatagac 38193762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 40732067 - 40732126
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||  || ||||||||| ||||    
T  40732067 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgctatgaaactttatagac 40732126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 53732223 - 53732176
Alignment:
Q  126 taggcgccgtttccggtaggagacttaaataggtctcctatggtagga 173  Q
    ||||||||||||||| |||||||| ||||||||||||| | |||||||    
T  53732223 taggcgccgtttccgataggagacctaaataggtctcccacggtagga 53732176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 11015442 - 11015373
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    ||||||||||||||  | ||||||||||||| |||||||| ||||||  |||| ||||||||||| |||||    
T  11015442 attttatgcgtttcagtagaaaaatcaaaat-aatcgaaagttattcagaattctacgaaactttccagac 11015373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 31432740 - 31432818
Alignment:
Q  42 agttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagacc 120  Q
    |||||| |||||| |  ||||| ||||||||| |||||||||  ||| ||||||  |||| ||||||||||||||||||    
T  31432740 agttgtgattttacgtatttcggtcgaaaaattaaaataaattaaaatttattcagaattctacgaaactttacagacc 31432818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 50911335 - 50911265
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| || ||||| | ||||||| |||||||||||| | ||||||  |||| |||||||||||||||||    
T  50911335 attttacgcatttcggtagaaaaattaaaataaatcgagagttattcagaattctacgaaactttacagac 50911265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 5827563 - 5827514
Alignment:
Q  131 gccgtttccggtaggagacttaaataggtctcctatggtaggagacatta 180  Q
    ||||||||| ||||||||||| ||| ||||| ||| ||||||||||||||    
T  5827563 gccgtttccagtaggagacttgaatgggtcttctacggtaggagacatta 5827514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 50911147 - 50911114
Alignment:
Q  80 aaatcgaaacttattcgaaattttacgaaacttt 113  Q
    ||||||| ||||||||||||||||||||||||||    
T  50911147 aaatcgacacttattcgaaattttacgaaacttt 50911114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 41534876 - 41534824
Alignment:
Q  49 attttatgcgtttcgatcgaaaaa-tcaaaataaatcgaaacttattcgaaat 100  Q
    ||||| ||||||||| |||||||| ||||||||||||||| |||||| |||||    
T  41534876 attttgtgcgtttcggtcgaaaaaatcaaaataaatcgaagcttatttgaaat 41534824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 17074649 - 17074544
Alignment:
Q  14 tggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    ||||||||||||| ||||||| | ||| | |||| |||||| |||||||| |||||||||||||||||||||||||||||||  |||| |||||||||||    
T  17074649 tggctttgctgcacttaagtgcaattccaattgtgattttacgcgtttcggtcgaaaaatcaaaataaatcgaaacttattcagaattctacgaaacttt 17074550  T
Q  114 acagac 119  Q
    ||||||    
T  17074549 acagac 17074544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 45265598 - 45265676
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccct 122  Q
    |||| |||||| |||||||| |||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  45265598 ttgtgattttacgcgtttcggtcgaaaaatcaaaataaatcgaaacttattcagaattctacgaaactttacagaccct 45265676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 54921538 - 54921611
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccct 122  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  54921538 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaacttattcagaattctacgaaactttacagaccct 54921611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 47641128 - 47641199
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagacc 120  Q
    |||||| |||||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  47641128 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaatttattcaaaattctacgaaactttacagacc 47641199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 48097504 - 48097579
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||| |  |||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||    
T  48097504 attttacgcgtttcggtaaaaaaatcaaaataaattgaaacttattcaaaattctacgaaactttatagaccctct 48097579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 48098071 - 48098001
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  48098071 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacgaaactttacagac 48098001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 54922497 - 54922427
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  54922497 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacgaaactttacagac 54922427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 45266419 - 45266352
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||||| |||||||| |||||||||||||||||||||||| |||||   |||| ||||||||||||||    
T  45266419 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaagttattaagaattctacgaaactttaca 45266352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 47642704 - 47642637
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| ||||||||||||||    
T  47642704 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacgaaactttaca 47642637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 21980566 - 21980621
Alignment:
Q  127 aggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaa 182  Q
    ||||||| ||| |||||||||| |||||||||||||||| | ||||||||||||||    
T  21980566 aggcgccattttcggtaggagatttaaataggtctcctacgataggagacattaaa 21980621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 22002997 - 22003052
Alignment:
Q  127 aggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaa 182  Q
    ||||||| ||| |||||||||| |||||||||||||||| | ||||||||||||||    
T  22002997 aggcgccattttcggtaggagatttaaataggtctcctacgataggagacattaaa 22003052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 47641783 - 47641842
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    ||||||||||||||||||||||||| | ||||| |||||||  |||||||||||| ||||    
T  47641783 ttcgatcgaaaaatcaaaataaatcaagacttagtcgaaatgctacgaaactttatagac 47641842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 17074310 - 17074359
Alignment:
Q  65 tcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttta 114  Q
    |||||||||||||||||||||| ||||| |||||||  ||||||||||||    
T  17074310 tcgaaaaatcaaaataaatcgagacttagtcgaaatgctacgaaacttta 17074359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 45266264 - 45266317
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    |||| |||||||||||||||||||||| ||||| |||||||  |||||||||||    
T  45266264 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgctacgaaacttt 45266317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 21219555 - 21219512
Alignment:
Q  135 tttccggtaggagacttaaataggtctcctatggtaggagacat 178  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||    
T  21219555 tttctggtgggagactttaataggtctcctatggtaggagacat 21219512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 27948350 - 27948401
Alignment:
Q  131 gccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaa 182  Q
    ||||||| |||||| |||||| ||||||||||||| ||||||| ||||||||    
T  27948350 gccgttttcggtagcagacttgaataggtctcctacggtaggaaacattaaa 27948401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 54922194 - 54922248
Alignment:
Q  65 tcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||||||||||||||||||| ||||| |||||||  || ||||||||| ||||    
T  54922194 tcgaaaaatcaaaataaatcgagacttagtcgaaatgctatgaaactttatagac 54922248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 2898114 - 2898189
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  2898114 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaacttattcagaattctacgaaactttacagaccctct 2898189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 21039055 - 21038954
Alignment:
Q  18 tttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacag 117  Q
    ||||||||| ||||||| ||||| |||||| |||||| |||||||| | |||||||||||||||||| ||||||||||  |||| ||||||| |||| ||    
T  21039055 tttgctgcacttaagtgcagttctagttgtgattttacgcgtttcggttgaaaaatcaaaataaatcaaaacttattcagaattatacgaaattttatag 21038956  T
Q  118 ac 119  Q
    ||    
T  21038955 ac 21038954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 17644902 - 17644970
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||||  |||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||    
T  17644902 gcgtttcagtcgaaaaatcaaaataaatcgaaacttattcagaattctacgaaactttacagaccctct 17644970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 8213601 - 8213672
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagacc 120  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||||||  |||| ||||||||||||||||||    
T  8213601 attttatgcttttcggtcgaaaaattaaaataaatcgaaacttattcagaattctacgaaactttacagacc 8213672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 12936420 - 12936495
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||| ||||||||||||||||||||||||| |||||  |||| || |||||||||||||||||||    
T  12936420 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaacatattcagaattctatgaaactttacagaccctct 12936495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 12950575 - 12950650
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||| ||||||||||||||||||||||||| |||||  |||| || |||||||||||||||||||    
T  12950575 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaacatattcagaattctatgaaactttacagaccctct 12950650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 16931168 - 16931093
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||| ||||||||||||||||||| |||| ||||||  |||| ||||||||||||||||||||||    
T  16931168 attttacgcgtttcggtcgaaaaatcaaaataaattgaaatttattcagaattctacgaaactttacagaccctct 16931093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 271
Target Start/End: Complemental strand, 18924535 - 18924390
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactgannnnnnnnn--gtataacaaaaatggcatgtgtaac 225  Q
    ||||||||||||| |||||||||| ||||||||||| | |||||||||| ||||| |  |||||           |||||||||||||| | ||||| ||    
T  18924535 ggcgccgtttccgataggagacttgaataggtctcccacggtaggagactttaaaaagtactgatttttttttttgtataacaaaaatgacttgtgtcac 18924436  T
Q  226 cattaaaatgatgaagaacattgatcttgttataatccctccacac 271  Q
    |||| || ||||||||||||||||||||  ||||||||||||||||    
T  18924435 cattgaattgatgaagaacattgatcttactataatccctccacac 18924390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 8214248 - 8214178
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| |||||||||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  8214248 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaagttattcagaattctacgaaactttacagac 8214178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 27809676 - 27809594
Alignment:
Q  42 agttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||| |||||| | |||||||||||||||||||| ||||||||||  |||| ||||||||||||| ||||||||    
T  27809676 agttgtaattttacgcgttttggtcgaaaaatcaaaataaatcaaaacttattcagaattctacgaaactttaccgaccctct 27809594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 22964824 - 22964904
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||| ||||||  ||||||| |||||||||||||||||||||||| ||||||  |||| |||| |||||||||||||||||    
T  22964824 ttgtgattttacacgtttcggtcgaaaaatcaaaataaatcgaaaattattcagaattatacgtaactttacagaccctct 22964904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 42057470 - 42057390
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||| |||||| |||||||| | ||||||| |||||||||||||||||||||  |||| ||||||||||||| ||||||||    
T  42057470 ttgtgattttacgcgtttcggttgaaaaattaaaataaatcgaaacttattcagaattctacgaaactttactgaccctct 42057390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 1818978 - 1818903
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||| | |||||| |||||    
T  1818978 ttgtgattttatgcgttttgatcgaaaaatcaaaataaatcgagacttagtcgaaatgttaaggaactttgcagac 1818903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 22965671 - 22965601
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| |||||||||||||||||||||||| ||||||  |||| |||||||||||| ||||    
T  22965671 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaagttattcagaattctacgaaactttatagac 22965601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 28109473 - 28109393
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||| |||||| | |||||| ||||||||||||||||||||||| ||||||   |||  ||||||||||||||||||||||    
T  28109473 ttgtgattttacgtgtttcggtcgaaaaatcaaaataaatcgaagcttatttagaatgctacgaaactttacagaccctct 28109393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 2401638 - 2401592
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattc 95  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  2401638 attttatgcgtttcggtcgaaaaatcaaaataaatcgaaatttattc 2401592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 12951548 - 12951478
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| || ||||| | |||||||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  12951548 attttacgcatttcggtagaaaaatcaaaataaatcgaaatttattcagaattctacgaaactttacagac 12951478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 30471336 - 30471256
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||| |||||| |||||||| ||||||||||||||||||| ||| |||||| | ||||  | |||| ||||||||||||||    
T  30471336 ttgtgattttacgcgtttcggtcgaaaaatcaaaataaattgaagcttatttggaattccatgaaaatttacagaccctct 30471256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 6807873 - 6807786
Alignment:
Q  14 tggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaatt 101  Q
    ||||||||||||  ||||||  ||||  |||||| |||||| |||||| | | |||||||||||||||||||||| |||||| |||||    
T  6807873 tggctttgctgctcttaagtacagtttcagttgtgattttacgcgttttggttgaaaaatcaaaataaatcgaaatttattcaaaatt 6807786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 16930528 - 16930469
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||  |||||||||||| ||||    
T  16930528 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgctacgaaactttagagac 16930469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 17646288 - 17646347
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||  |||||||||||| ||||    
T  17646288 ttcggtcgaaaaatcaaaataaatcgacacttagtcgaaatgctacgaaactttatagac 17646347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 12937071 - 12937125
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttta 114  Q
    ||||||||||||||||||||||||||| ||||| |||||||  ||| ||||||||    
T  12937071 ttcgatcgaaaaatcaaaataaatcgagacttagtcgaaatgctacaaaacttta 12937125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 12937385 - 12937315
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| || ||||| | |||||||||||||||||||||| ||||||  |||| || ||||||||||||||    
T  12937385 attttacgcatttcggtagaaaaatcaaaataaatcgaaatttattcagaattctatgaaactttacagac 12937315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 12951234 - 12951288
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttta 114  Q
    ||||||||||||||||||||||||||| ||||| |||||||  ||| ||||||||    
T  12951234 ttcgatcgaaaaatcaaaataaatcgagacttagtcgaaatgctacaaaacttta 12951288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 41196304 - 41196366
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactg 190  Q
    ||||||||||  |||||||||||| ||||||||||| | || ||||||||||||| |||||||    
T  41196304 ggcgccgtttatggtaggagacttgaataggtctcccacggaaggagacattaaaaaagactg 41196366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 1014223 - 1014174
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagaca 177  Q
    ||||||||||||| ||||||||||| |||||||||||| |||||| ||||    
T  1014223 ggcgccgtttccgataggagacttagataggtctcctacggtaggtgaca 1014174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 271
Target Start/End: Complemental strand, 29372276 - 29372211
Alignment:
Q  206 acaaaaatggcatgtgtaaccattaaaatgatgaagaacattgatcttgttataatccctccacac 271  Q
    ||||||||| ||| ||| ||||||| | ||||||||||||||||||||  | ||||||||||||||    
T  29372276 acaaaaatgacatttgtcaccattagattgatgaagaacattgatcttactgtaatccctccacac 29372211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Original strand, 2898726 - 2898778
Alignment:
Q  67 gaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||||||||||||||||| ||||| |||||||  |||||||||||| ||||    
T  2898726 gaaaaatcaaaataaatcgagacttagtcgaaatgctacgaaactttatagac 2898778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 35471684 - 35471624
Alignment:
Q  131 gccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactga 191  Q
    |||||||  |||||||||||| ||||||||||| | |||||||||||||||| | ||||||    
T  35471684 gccgtttatggtaggagacttgaataggtctcccacggtaggagacattaaaaaggactga 35471624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 41473314 - 41473370
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||| ||||||||||||||||| |||| | ||| |||||||| ||||||||||||||    
T  41473314 ttcggtcgaaaaatcaaaataagtcgagatttagtcgaaattctacgaaactttaca 41473370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 18966723 - 18966664
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| ||| |||  ||| |||||||||||||    
T  18966723 ttcggtcgaaaaatcaaaataaatcgagacttagtcggaatgctacaaaactttacagac 18966664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 21038108 - 21038163
Alignment:
Q  36 agttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaactt 91  Q
    ||||| |||||| |||||| || ||||| || ||||||||||||||||||||||||    
T  21038108 agttctagttgtgattttacgcatttcggtcaaaaaatcaaaataaatcgaaactt 21038163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 39940096 - 39940163
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||||| | |||||| || ||||||||||||||||||||| ||||||  | || ||||||||||||||    
T  39940096 attttacgtgtttcggtcaaaaaatcaaaataaatcgaaaattattcagagttctacgaaactttaca 39940163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 42056881 - 42056822
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| ||||||||||||||||||| || ||||| |||||||  |||||||||||| ||||    
T  42056881 ttcggtcgaaaaatcaaaataaattgagacttagtcgaaatgctacgaaactttatagac 42056822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 7509732 - 7509662
Alignment:
Q  201 gtataacaaaaatggcatgtgtaaccattaaaatgatgaagaacattgatcttgttataatccctccacac 271  Q
    |||| ||||||||| ||| ||| ||||||| | |||||||||||| |||||||  | ||||||||||||||    
T  7509732 gtatcacaaaaatgacatttgtcaccattagattgatgaagaacactgatcttactgtaatccctccacac 7509662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 42056569 - 42056639
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||  | |||||||||||||||||||||| ||| |   |||| |||||||||||||||||    
T  42056569 attttacgcgtttcagtagaaaaatcaaaataaatcgaaagttacttagaattctacgaaactttacagac 42056639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 12937238 - 12937283
Alignment:
Q  68 aaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    |||||| |||| ||||||||||||||||| ||| ||||||||||||    
T  12937238 aaaaataaaaagaaatcgaaacttattcggaatgttacgaaacttt 12937283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 12951401 - 12951446
Alignment:
Q  68 aaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    |||||| |||| ||||||||||||||||| ||| ||||||||||||    
T  12951401 aaaaataaaaagaaatcgaaacttattcggaatgttacgaaacttt 12951446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 21098428 - 21098363
Alignment:
Q  59 tttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    ||||| ||||||||||||||||||||||||| |  ||||  || ||||||||||| |||| |||||    
T  21098428 tttcggtcgaaaaatcaaaataaatcgaaacgttgtcgattttctacgaaactttgcagatcctct 21098363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 2898992 - 2898940
Alignment:
Q  67 gaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||||||||||||||||| ||||| |||||||  || ||||||||| ||||    
T  2898992 gaaaaatcaaaataaatcgagacttagtcgaaatgctatgaaactttatagac 2898940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 28108806 - 28108754
Alignment:
Q  67 gaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    ||||||||||||||||| || ||||| ||| |||  |||||||||||||||||    
T  28108806 gaaaaatcaaaataaattgagacttaatcggaatgctacgaaactttacagac 28108754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 51935553 - 51935622
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacaga 118  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  51935553 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaacttattcagaattttacgaaactttacaga 51935622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 45423247 - 45423142
Alignment:
Q  14 tggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    ||||||||||||| ||||||  ||||| |||||| | |||| || ||||| |||||||||||||||||||| ||||| |||| ||||| || ||||||||    
T  45423247 tggctttgctgcacttaagtccagttctagttgtgactttacgcatttcgttcgaaaaatcaaaataaatctaaactcattcaaaattctatgaaacttt 45423148  T
Q  114 acagac 119  Q
    ||||||    
T  45423147 acagac 45423142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 48899003 - 48899110
Alignment:
Q  14 tggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    ||||||||||||   |||||| | |||||||||| ||||||  | |||||||||||||||||||||||||| ||||| ||||  |||| ||||||| |||    
T  48899003 tggctttgctgc---taagtgcacttcaagttgtgattttacacctttcgatcgaaaaatcaaaataaatcaaaactcattcagaattctacgaaaattt 48899099  T
Q  114 acagaccctct 124  Q
    |||||||||||    
T  48899100 acagaccctct 48899110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 34814645 - 34814718
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccct 122  Q
    |||||| | |||||| |||||||||||||||||||||||||||||||  |||| || |||||||||||||||||    
T  34814645 attttacgtgtttcggtcgaaaaatcaaaataaatcgaaacttattcagaattctatgaaactttacagaccct 34814718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 7998348 - 7998414
Alignment:
Q  50 ttttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    ||||| |||||||| |||||||||||||||||||||||| ||||||  |||| ||||||||||||||    
T  7998348 ttttacgcgtttcgttcgaaaaatcaaaataaatcgaaatttattcagaattctacgaaactttaca 7998414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 34815589 - 34815519
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  34815589 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacgaaactttacagac 34815519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 51936524 - 51936454
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  51936524 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacgaaactttacagac 51936454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 45423014 - 45423110
Alignment:
Q  17 ctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    |||||||||| ||||||  ||||| |||||| |||||| |  ||||| |||||| ||||||||||||||| ||||||||| |||  |||||||||||    
T  45423014 ctttgctgcacttaagtccagttctagttgtgattttacgtttttcggtcgaaatatcaaaataaatcgagacttattcggaatggtacgaaacttt 45423110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 4108767 - 4108712
Alignment:
Q  127 aggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaa 182  Q
    |||||| |||| ||| ||||||||||||||||||||||| ||||||||||||||||    
T  4108767 aggcgctgttttcggcaggagacttaaataggtctcctacggtaggagacattaaa 4108712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 7999288 - 7999213
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||| | || ||||||||||||||||||||||||||||  |||| ||| |||||||| |||||||||    
T  7999288 attttacgcgttttggtcaaaaaatcaaaataaatcgaaacttattcagaattctacaaaactttagagaccctct 7999213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 51936213 - 51936272
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||||||||| |||||||  |||||||||||| ||||    
T  51936213 ttcggtcgaaaaatcaaaataaatcgaaacttagtcgaaatgctacgaaactttatagac 51936272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 253
Target Start/End: Complemental strand, 48912086 - 48911958
Alignment:
Q  126 taggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactga-nnnnnnnnngtataacaaaaatggcatgtgtaa 224  Q
    ||||||||||||||||||||||||   |||||||||||||  ||||||||||||||| ||   |||          |||||||||||||| ||| ||| |    
T  48912086 taggcgccgtttccggtaggagacgagaataggtctcctactgtaggagacattaaaaaatggtgattttttttttgtataacaaaaatgacatttgtca 48911987  T
Q  225 ccattaaaatgatgaagaacattgatctt 253  Q
    |||||| | ||||||||||||||||||||    
T  48911986 ccattagattgatgaagaacattgatctt 48911958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 115
Target Start/End: Complemental strand, 48899835 - 48899763
Alignment:
Q  44 ttgttattttatgcgtttcgat-cgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttac 115  Q
    |||| ||||||||||||||||| ||||||||||||||||||| |||||||||   |||| ||||||| |||||    
T  48899835 ttgtgattttatgcgtttcgattcgaaaaatcaaaataaatcaaaacttatttagaattctacgaaattttac 48899763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 25484317 - 25484262
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaa 99  Q
    |||||||||| | ||||||| |||||||||||||||||||||| ||||||| ||||    
T  25484317 ttgttattttgttcgtttcggtcgaaaaatcaaaataaatcgagacttattagaaa 25484262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 34815281 - 34815340
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||  |||||||||||| ||||    
T  34815281 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgctacgaaactttatagac 34815340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 271
Target Start/End: Complemental strand, 4108690 - 4108620
Alignment:
Q  201 gtataacaaaaatggcatgtgtaaccattaaaatgatgaagaacattgatcttgttataatccctccacac 271  Q
    |||||||||||||| ||  ||| ||| ||| | ||||||||||||||||||||  ||||||||||||||||    
T  4108690 gtataacaaaaatgacacttgtcaccgttagattgatgaagaacattgatcttactataatccctccacac 4108620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 16263998 - 16264060
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactg 190  Q
    ||||||||||  |||||||||||| ||||||||||| | || ||||||||||||| |||||||    
T  16263998 ggcgccgtttatggtaggagacttgaataggtctcccacgggaggagacattaaaaaagactg 16264060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 47357399 - 47357294
Alignment:
Q  15 ggctttgctgcagttaagtgaagttcaagttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttta 114  Q
    |||||||||||| ||||||| |||   |||  | |||||| |||||||| || |||||  ||||||||||||||||||||   |||| ||||||||||||    
T  47357399 ggctttgctgcacttaagtgcagtatcagtaatgattttacgcgtttcggtcaaaaaaataaaataaatcgaaacttatttagaattctacgaaacttta 47357300  T
Q  115 cagacc 120  Q
     |||||    
T  47357299 tagacc 47357294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 6131417 - 6131485
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||||| || ||||||||||| |||||||  |||| ||||||| ||||| ||||||| ||| |||||    
T  6131417 gcgtttcggtcaaaaaatcaaaacaaatcgaggcttactcgaaatgttacggaactttatagatcctct 6131485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 7998658 - 7998602
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||| ||||||||| |||||||||||  ||||| |||||||  ||||||||||||||    
T  7998658 ttcggtcgaaaaattaaaataaatcgtgacttagtcgaaatgctacgaaactttaca 7998602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 40042940 - 40042888
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacatta 180  Q
    |||||||||| |||||| ||| || ||||||||| ||| ||||||||||||||    
T  40042940 ggcgccgttttcggtagtagatttgaataggtcttctacggtaggagacatta 40042888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 36583465 - 36583541
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagacc 120  Q
    |||| |||||| |||||||||||||||||| ||||||||||||||||||||   |||| ||||||||||||||||||    
T  36583465 ttgtgattttacgcgtttcgatcgaaaaataaaaataaatcgaaacttatttagaattctacgaaactttacagacc 36583541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 31532 - 31591
Alignment:
Q  65 tcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||    
T  31532 tcgaaaaatcaaaataaatcgaaacttattcaaaattctacgaaactttatagaccctct 31591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 44655469 - 44655544
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||| |||||||||||||||||||||||| ||||||  |||| |||||||||||||| |||||||    
T  44655469 attttacgcgtttcggtcgaaaaatcaaaataaatcgaaatttattcagaattctacgaaactttacaaaccctct 44655544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 36584378 - 36584308
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| ||||||||||||||||||||||| ||||||||| ||||||  |||| |||||||||||||||||    
T  36584378 attttacgcgtttcgatcgaaaaatcaaaacaaatcgaaagttattcagaattctacgaaactttacagac 36584308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 40439989 - 40440069
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||| ||||||||||||||  ||||||||||||||||||||||  |||||||| |||  |||||||||||||||| |||||    
T  40439989 ttgtgattttatgcgtttcagtcgaaaaatcaaaataaatcgacgcttattcggaatgctacgaaactttacagatcctct 40440069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 44328693 - 44328768
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||| |||||||||||| ||||||||||||||||||  |||| |||||||||| ||| |||||||    
T  44328693 attttacgcgtttcggtcgaaaaatcaacataaatcgaaacttattcagaattctacgaaacttcacaaaccctct 44328768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 31298763 - 31298685
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctcttta 127  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| ||||||||||| |||| ||||||||    
T  31298763 attttacgcgtttcggttgaaaaatcaaaataaatcgaaatttattcagaattctacgaaactttgcagatcctcttta 31298685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 8962270 - 8962217
Alignment:
Q  127 aggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacatta 180  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||||||||||    
T  8962270 aggcgtcgtttccggtaggagacttaaataggtctcctactgtaggagacatta 8962217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 10601757 - 10601816
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||    
T  10601757 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgttacgaaactttatagac 10601816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 15629433 - 15629500
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctc 123  Q
    |||||||| ||||||||| |||||||||||||||||||||  |||| ||||||||||||  |||||||    
T  15629433 gcgtttcggtcgaaaaattaaaataaatcgaaacttattcagaattctacgaaactttatggaccctc 15629500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 44656480 - 44656413
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| ||||||||||||||    
T  44656480 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcataattctacgaaactttaca 44656413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 15630371 - 15630301
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||  | |||||||||||||||||||||| ||||||  |||| |||||||||||||||||    
T  15630371 attttacgcgtttcagttgaaaaatcaaaataaatcgaaagttattcagaattctacgaaactttacagac 15630301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 31297802 - 31297872
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| ||||| |||||||||||    
T  31297802 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacgatactttacagac 31297872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 44329637 - 44329567
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||||| | ||||||||||||||||| |||| ||||||  |||| |||||||||||||||||    
T  44329637 attttacgcgtttcggtagaaaaatcaaaataaatagaaagttattcagaattctacgaaactttacagac 44329567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 6173006 - 6172942
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    |||||| |||||||| | |||||||||||||||||||||| ||||||  |||| |||||||||||    
T  6173006 attttacgcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacgaaacttt 6172942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 44329331 - 44329390
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| |||||||||||||||||||||| ||||| |||||||  |||||||||||| ||||    
T  44329331 ttcggtcgaaaaatcaaaataaatcgagacttagtcgaaatgctacgaaactttatagac 44329390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 3260139 - 3260101
Alignment:
Q  57 cgtttcgatcgaaaaatcaaaataaatcgaaacttattc 95  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  3260139 cgtttcggtcgaaaaatcaaaataaatcgaaacttattc 3260101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 7355064 - 7355102
Alignment:
Q  137 tccggtaggagacttaaataggtctcctatggtaggaga 175  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  7355064 tccggtaggagacttaaatatgtctcctatggtaggaga 7355102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 6172859 - 6172910
Alignment:
Q  68 aaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    ||||||||||||||||||| ||||| |||||||  |||||||||||| ||||    
T  6172859 aaaaatcaaaataaatcgagacttagtcgaaatactacgaaactttatagac 6172910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 23988561 - 23988624
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactga 191  Q
    ||||||||||  |||||||||||| ||||||||||| | || |||||| |||||| ||||||||    
T  23988561 ggcgccgtttatggtaggagacttgaataggtctcccacgggaggagaaattaaaaaagactga 23988624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 3260026 - 3260076
Alignment:
Q  69 aaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||||||||||||||||| ||||||  |||| ||||||||||| |||||    
T  3260026 aaaatcaaaataaatcgaaagttattcagaattctacgaaacttttcagac 3260076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 44656130 - 44656184
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttta 114  Q
    |||| ||||||||||| |||||||||| ||||| |||||||  ||||||||||||    
T  44656130 ttcggtcgaaaaatcataataaatcgagacttagtcgaaatgctacgaaacttta 44656184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 6172233 - 6172277
Alignment:
Q  80 aaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    ||||||||||||||||  |||| |||||||||||||||| |||||    
T  6172233 aaatcgaaacttattcagaattctacgaaactttacagaacctct 6172277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 34414976 - 34414932
Alignment:
Q  75 aaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||||||||||| ||||||  |||| |||||||||||||||||    
T  34414976 aaaataaatcgaaagttattcagaattctacgaaactttacagac 34414932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 22929043 - 22929099
Alignment:
Q  68 aaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  22929043 aaaaatcaaaataaatcgaaacttattcagaattttacgaaactttacataccctct 22929099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 25694202 - 25694272
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| |||||| | |||||||||||||||||||||||| ||||||  |||| ||||||| |||||||||    
T  25694202 attttacgcgttttggtcgaaaaatcaaaataaatcgaaagttattcagaattctacgaaattttacagac 25694272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 35240593 - 35240647
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaa 182  Q
    |||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||    
T  35240593 ggcgccgtttccggtaggagacttgaatatgtctcctacggtagaagacattaaa 35240647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 25695102 - 25695045
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaatt 101  Q
    |||| |||||| |||||||| |||||||||||||||||||| |||||||||| |||||    
T  25695102 ttgtgattttacgcgtttcggtcgaaaaatcaaaataaatcaaaacttattcaaaatt 25695045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 31602858 - 31602777
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaa-taaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||| |||||| |||||||  |||||||| ||||| |||||||||||||||||  |||| ||| ||||||||||||||||||    
T  31602858 ttgtgattttacgcgtttcagtcgaaaaaacaaaaataaatcgaaacttattcagaattctacaaaactttacagaccctct 31602777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 32838202 - 32838251
Alignment:
Q  131 gccgtttccggtaggagacttaaataggtctcctatggtaggagacatta 180  Q
    |||||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  32838202 gccgtttccgttaggagacttgaataggtctcctacggtaggagacatta 32838251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 48556821 - 48556760
Alignment:
Q  58 gtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||| | |||||||||||||||||||||| ||||||  | ||||||||||||||||||||    
T  48556821 gtttcggtagaaaaatcaaaataaatcgaaagttattcagatttttacgaaactttacagac 48556760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 6038120 - 6038060
Alignment:
Q  60 ttcgatcgaaaaa-tcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    ||||||||||||| |||||||||||||| ||||| |||||||  |||||||||||||||||    
T  6038120 ttcgatcgaaaaaatcaaaataaatcgagacttaatcgaaatgctacgaaactttacagac 6038060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 14815490 - 14815565
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||| || |||||||||||||||| |||||||| ||  |||| ||| ||| ||||||||||||||    
T  14815490 attttacgcgtttcggtcaaaaaatcaaaataaattgaaacttactcagaattctacaaaattttacagaccctct 14815565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 15262485 - 15262560
Alignment:
Q  49 attttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||| |||||||| || |||||||||||||||| |||||||| ||  |||| ||| ||| ||||||||||||||    
T  15262485 attttacgcgtttcggtcaaaaaatcaaaataaattgaaacttactcagaattctacaaaattttacagaccctct 15262560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 37997897 - 37997834
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactga 191  Q
    ||||||||||  |||||||||||| ||||||||||| | || ||||||||||||| ||||||||    
T  37997897 ggcgccgtttatggtaggagacttgaataggtctcccacgggaggagacattaaaaaagactga 37997834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 190
Target Start/End: Original strand, 2946755 - 2946817
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactg 190  Q
    ||||||||||  |||||||||||| ||||||||||| | || ||||||||||||| |||||||    
T  2946755 ggcgccgtttatggtaggagacttgaataggtctcccacgggaggagacattaaaaaagactg 2946817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 1503343 - 1503279
Alignment:
Q  127 aggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactga 191  Q
    |||||||||||  |||||||||||| ||||||||||| |  ||||||||||||||| || |||||    
T  1503343 aggcgccgtttatggtaggagacttgaataggtctcccacagtaggagacattaaaaaatactga 1503279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 6483803 - 6483866
Alignment:
Q  128 ggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactga 191  Q
    ||||||||||  |||||||||||| ||||||||||| |  | ||||||||||||| ||||||||    
T  6483803 ggcgccgtttatggtaggagacttgaataggtctcccacaggaggagacattaaaaaagactga 6483866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 271
Target Start/End: Original strand, 26048886 - 26048953
Alignment:
Q  204 taacaaaaatggcatgtgtaaccattaaaatgatgaagaacattgatcttgttataatccctccacac 271  Q
    ||||||||||| ||| ||| || |||| | ||||||||||||||| ||||  ||||||||||||||||    
T  26048886 taacaaaaatgacatatgttactattagattgatgaagaacattggtcttactataatccctccacac 26048953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 31602191 - 31602132
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| ||||||||| |||||||||||| ||||| |||||||  |||||||||||| ||||    
T  31602191 ttcggtcgaaaaataaaaataaatcgagacttagtcgaaatgctacgaaactttatagac 31602132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 48556517 - 48556576
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||| ||||||||||||||||||| || ||||| |||||||  |||||||||||| ||||    
T  48556517 ttcggtcgaaaaatcaaaataaattgagacttagtcgaaatgctacgaaactttaaagac 48556576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 161
Target Start/End: Complemental strand, 2704844 - 2704814
Alignment:
Q  131 gccgtttccggtaggagacttaaataggtct 161  Q
    |||||||||||||||||||||||||||||||    
T  2704844 gccgtttccggtaggagacttaaataggtct 2704814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 25694513 - 25694459
Alignment:
Q  60 ttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttta 114  Q
    |||| |||||||||||||||| ||||| ||||| |||||||  ||||||||||||    
T  25694513 ttcggtcgaaaaatcaaaatagatcgagacttagtcgaaatgctacgaaacttta 25694459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 25694361 - 25694304
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaacttt 113  Q
    |||||||| ||||||||  |||| ||||||| ||||||||| ||| ||||||||||||    
T  25694361 gcgtttcggtcgaaaaaataaaaaaaatcgagacttattcggaatcttacgaaacttt 25694304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 113
Target Start/End: Original strand, 47610325 - 47610358
Alignment:
Q  80 aaatcgaaacttattcgaaattttacgaaacttt 113  Q
    ||||||||||||||||| ||||||||||||||||    
T  47610325 aaatcgaaacttattcggaattttacgaaacttt 47610358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 23939128 - 23939076
Alignment:
Q  67 gaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||||||||||||||||| ||||  ||| |||  |||||||||||||||||    
T  23939128 gaaaaatcaaaataaatcgagacttgatcggaatgatacgaaactttacagac 23939076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 35248907 - 35248855
Alignment:
Q  44 ttgttattttatgcgtttcgatcgaaaaatcaaaataaatcgaaacttattcg 96  Q
    |||| |||||| |||| ||| ||||||||||||||||||||||  ||||||||    
T  35248907 ttgtaattttaagcgtctcggtcgaaaaatcaaaataaatcgagccttattcg 35248855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 46409359 - 46409296
Alignment:
Q  127 aggcgccgtttccggtaggagacttaaataggtctcctatggtaggagacattaaacaagactga 191  Q
    |||||||||||  |||||||||||| ||||||||||  |  ||||||||||||||| ||||||||    
T  46409359 aggcgccgtttatggtaggagacttgaataggtctctcacagtaggagacattaaa-aagactga 46409296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 47610442 - 47610390
Alignment:
Q  67 gaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    ||||||||||||| |||||| ||||| |||||||  |||||||||||| ||||    
T  47610442 gaaaaatcaaaatgaatcgagacttaatcgaaatgctacgaaactttatagac 47610390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 35446 - 35378
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagaccctct 124  Q
    |||||||| ||||||||||||||||||||||||| | ||||   || ||||||||||| |||| |||||    
T  35446 gcgtttcggtcgaaaaatcaaaataaatcgaaacgttttcggttttctacgaaactttgcagatcctct 35378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 19893 - 19926
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  19893 gcgtttcggtcgaaaaatcaaaataaatcgaaac 19926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 34322 - 34289
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  34322 gcgtttcggtcgaaaaatcaaaataaatcgaaac 34289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 43126 - 43093
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  43126 gcgtttcggtcgaaaaatcaaaataaatcgaaac 43093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 53494 - 53461
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  53494 gcgtttcggtcgaaaaatcaaaataaatcgaaac 53461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 55840 - 55807
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  55840 gcgtttcggtcgaaaaatcaaaataaatcgaaac 55807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 74512 - 74479
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  74512 gcgtttcggtcgaaaaatcaaaataaatcgaaac 74479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 127345 - 127405
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttaca 116  Q
    |||||||| | |||||||||||||||||||||| ||||||  |||| ||| ||||||||||    
T  127345 gcgtttcggtagaaaaatcaaaataaatcgaaagttattcagaattctacaaaactttaca 127405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 127642 - 127590
Alignment:
Q  67 gaaaaatcaaaataaatcgaaacttattcgaaattttacgaaactttacagac 119  Q
    |||||||||||||||||||| ||||| ||||| |  |||||||||||| ||||    
T  127642 gaaaaatcaaaataaatcgagacttagtcgaattgctacgaaactttagagac 127590  T

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Target: scaffold0021 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 91
Target Start/End: Complemental strand, 95715 - 95680
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaactt 91  Q
    |||||||| |||||||||||||||||||||||||||    
T  95715 gcgtttcggtcgaaaaatcaaaataaatcgaaactt 95680  T

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Target: scaffold0021; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 39179 - 39146
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  39179 gcgtttcggtcgaaaaatcaaaataaatcgaaac 39146  T

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Target: scaffold0021; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 40645 - 40612
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||||||||||| |||||||||||||||||    
T  40645 gcgtttcgatcgaaaattcaaaataaatcgaaac 40612  T

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Target: scaffold0021; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 49117 - 49084
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  49117 gcgtttcggtcgaaaaatcaaaataaatcgaaac 49084  T

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Target: scaffold0021; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 50184 - 50151
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  50184 gcgtttcggtcgaaaaatcaaaataaatcgaaac 50151  T

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Target: scaffold0040 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 165
Target Start/End: Complemental strand, 69644 - 69610
Alignment:
Q  131 gccgtttccggtaggagacttaaataggtctccta 165  Q
    ||||||||||||||||||||||||||| |||||||    
T  69644 gccgtttccggtaggagacttaaatagatctccta 69610  T

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Target: scaffold0515 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 10791 - 10824
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  10791 gcgtttcggtcgaaaaatcaaaataaatcgaaac 10824  T

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Target: scaffold0152 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 18360 - 18393
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  18360 gcgtttcggtcgaaaaatcaaaataaatcgaaac 18393  T

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Target: scaffold0052 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 3775 - 3808
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  3775 gcgtttcggtcgaaaaatcaaaataaatcgaaac 3808  T

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Target: scaffold0052; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 18300 - 18333
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  18300 gcgtttcggtcgaaaaatcaaaataaatcgaaac 18333  T

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Target: scaffold0052; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 30237 - 30204
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  30237 gcgtttcggtcgaaaaatcaaaataaatcgaaac 30204  T

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Target: scaffold0052; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 41791 - 41824
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  41791 gcgtttcggtcgaaaaatcaaaataaatcgaaac 41824  T

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Target: scaffold0052; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 53446 - 53413
Alignment:
Q  56 gcgtttcgatcgaaaaatcaaaataaatcgaaac 89  Q
    |||||||| |||||||||||||||||||||||||    
T  53446 gcgtttcggtcgaaaaatcaaaataaatcgaaac 53413  T

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