View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_52 (Length: 319)
Name: NF20730_low_52
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 14598785 - 14598482
Alignment:
| Q |
1 |
gcaatatggttatggctcatgtcaattacctgtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcaccggttaaccgtagca |
100 |
Q |
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| T |
14598785 |
gcaatatggttatggctcatgtcaattacttgtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcaccggttaaccgtagca |
14598686 |
T |
|
| Q |
101 |
ctgaccttgccgtcctttatgagaaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598685 |
ctgaccttgccgtcctttatgagaaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgc |
14598586 |
T |
|
| Q |
201 |
tgatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagat |
300 |
Q |
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| T |
14598585 |
tgatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagat |
14598486 |
T |
|
| Q |
301 |
gatg |
304 |
Q |
| |
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|||| |
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| T |
14598485 |
gatg |
14598482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 304
Target Start/End: Original strand, 14609695 - 14609994
Alignment:
| Q |
5 |
tatggttatggctcatgtcaattacctgtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcaccggttaaccgtagcactga |
104 |
Q |
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| T |
14609695 |
tatggttgtgggttatgtcaattacttgtgagatatggttcggcttttcatggatacttgaccaaattccaaagctttctccagttaatcgtagcactga |
14609794 |
T |
|
| Q |
105 |
ccttgccgtcctttatgagaaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgat |
204 |
Q |
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| T |
14609795 |
cctagacgtccttcatgagaaattccacgttgtaaccccgacaaatcccacagcaagatctgatctgcctggttgtgacctctttgtgtcgacggctgat |
14609894 |
T |
|
| Q |
205 |
cctgaaaaggagccgcctcttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatg |
304 |
Q |
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| T |
14609895 |
cctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgcttgttatgtttcagatgatg |
14609994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 142 - 293
Target Start/End: Complemental strand, 12194952 - 12194801
Alignment:
| Q |
142 |
ccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaatacca |
241 |
Q |
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|||| |||||| ||||||| ||||||||| || || ||| | |||||||||||||| ||||| ||||| ||||| || ||||| || || ||||||| |
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| T |
12194952 |
ccagcaaatccaacagggaaatctgatctcccgggaattgatatgtttgtgtcaactgccgatccagaaaaagagccaccccttgttaccgcaaatacca |
12194853 |
T |
|
| Q |
242 |
ttctttccatattagcagttgattaccctgtggagaaactcgcttgttatgt |
293 |
Q |
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||||||| || ||||||||||||||||||| || |||||||| |||||||| |
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| T |
12194852 |
ttctttcaattctagcagttgattaccctgttgataaactcgcatgttatgt |
12194801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 304
Target Start/End: Original strand, 44632884 - 44633032
Alignment:
| Q |
156 |
agggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatatta |
255 |
Q |
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|||||| |||||||| ||||| ||| ||||||| |||||||| ||||| ||||| ||||| |||||||||||||| || |||||| | || || | |
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| T |
44632884 |
agggaggtctgatctccctggaattgatgtctttgtttcaactgcagatccagaaaaagagccacctcttgtaactgcaaacaccattttatctatcctt |
44632983 |
T |
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| Q |
256 |
gcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatg |
304 |
Q |
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||||||||||| |||||||| ||| | ||||||||| | || ||||||| |
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| T |
44632984 |
gcagttgattatcctgtggaaaaagttgcttgttatttgtctgatgatg |
44633032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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