View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_53 (Length: 309)

Name: NF20730_low_53
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_53
NF20730_low_53
[»] chr6 (11 HSPs)
chr6 (41-291)||(2964370-2964620)
chr6 (38-270)||(2951833-2952053)
chr6 (38-292)||(3003742-3003984)
chr6 (49-293)||(2997363-2997607)
chr6 (38-270)||(2927051-2927271)
chr6 (38-291)||(2934469-2934713)
chr6 (41-293)||(2658958-2659210)
chr6 (39-280)||(2973894-2974120)
chr6 (38-176)||(2982839-2982977)
chr6 (38-107)||(2937505-2937574)
chr6 (215-271)||(2982762-2982818)
[»] chr3 (3 HSPs)
chr3 (67-271)||(49613323-49613527)
chr3 (27-151)||(49618421-49618543)
chr3 (214-269)||(49618306-49618361)
[»] scaffold0024 (2 HSPs)
scaffold0024 (36-174)||(35204-35342)
scaffold0024 (217-291)||(35361-35435)
[»] chr7 (2 HSPs)
chr7 (239-291)||(3339039-3339091)
chr7 (42-79)||(3339092-3339129)


Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 291
Target Start/End: Complemental strand, 2964620 - 2964370
Alignment:
Q  41 tttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaata 140  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2964620 tttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaata 2964521  T
Q  141 accaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttttcaata 240  Q
    | ||||||||| | |||||||||||||||||||||||||   |||||||||||||||||| || |||||||| |||||||||||||||||||||||||||    
T  2964520 atcaaaataatcagtagtgagtttaagaaaagaagggatgttagtgttaggaacactagcatttgtagaactcaatgaaagactgtaaattttttcaata 2964421  T
Q  241 acgaaaaagggaagttgattttcaagtaacattaaatctgttgttatacca 291  Q
    |||||| ||||||| ||||||||||||||||||||||||| | ||||||||    
T  2964420 acgaaatagggaagctgattttcaagtaacattaaatctgatcttatacca 2964370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 38 - 270
Target Start/End: Complemental strand, 2952053 - 2951833
Alignment:
Q  38 gactttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta 137  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2952053 gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta 2951954  T
Q  138 ataaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttttca 237  Q
    ||||||||||||||||||||||||||||||||||||| ||||   |||| |||||||| |||            | ||||||||||||||||||||||||    
T  2951953 ataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtgataggaacattag------------tcaatgaaagactgtaaattttttca 2951866  T
Q  238 ataacgaaaaagggaagttgattttcaagtaac 270  Q
    ||||||||||||||||| |||||||||||||||    
T  2951865 ataacgaaaaagggaagctgattttcaagtaac 2951833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 38 - 292
Target Start/End: Original strand, 3003742 - 3003984
Alignment:
Q  38 gactttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta 137  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3003742 gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatcacccttatcaaaatccaattttgatttattgta 3003841  T
Q  138 ataaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttttca 237  Q
    ||||||||||||||||||||||||||||||||||||| ||||   |||| |||||||| |||            | ||||||||||||||||||||||||    
T  3003842 ataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtggtaggaacattag------------tcaatgaaagactgtaaattttttca 3003929  T
Q  238 ataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttataccat 292  Q
    ||||||||||||||||| |||||||||||||||  ||||||  || |||||||||    
T  3003930 ataacgaaaaagggaagctgattttcaagtaaccataaatcgtttcttataccat 3003984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 49 - 293
Target Start/End: Original strand, 2997363 - 2997607
Alignment:
Q  49 ggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaataaccaaaat 148  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||  ||| |||||||||||| || ||   |||     
T  2997363 ggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagtttgatttattgaaagaaaagaaaa 2997462  T
Q  149 aatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttttcaataacgaaaaa 248  Q
    ||| ||||||||||| ||||||| |||||||   ||||||||||  |||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  2997463 aattaatagtgagttcaagaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagactgtaaattttttcaataacgaaaaa 2997562  T
Q  249 gggaagttgattttcaagtaacattaaatctgttgttataccatc 293  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  2997563 gggaagttgattttcaagtaacattaaatttgttgttataccatc 2997607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 38 - 270
Target Start/End: Complemental strand, 2927271 - 2927051
Alignment:
Q  38 gactttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta 137  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  2927271 gactttcaataggatgttgcaaatgaaatatccgaatcagatcagtgaagtgccttataataatatcacccttatcaaaattcaattttgatttattgta 2927172  T
Q  138 ataaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttttca 237  Q
    ||||||||||||||||||||||||||||||||||||| ||||   |||| |||||||| |||            | ||||||||||||||||||||||||    
T  2927171 ataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtggtaggaacattag------------tcaatgaaagactgtaaattttttca 2927084  T
Q  238 ataacgaaaaagggaagttgattttcaagtaac 270  Q
    ||||||||||||||||| |||||||||||||||    
T  2927083 ataacgaaaaagggaagctgattttcaagtaac 2927051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 38 - 291
Target Start/End: Complemental strand, 2934713 - 2934469
Alignment:
Q  38 gactttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta 137  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2934713 gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta 2934614  T
Q  138 ataaccaaaataatgaatagtgagtttaagaaaagaa---gggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttt 234  Q
    ||||||||||||||||||||||||| |||||||||||    | ||   |||||| ||| || |||            | |||||||||||||||||||||    
T  2934613 ataaccaaaataatgaatagtgagtctaagaaaagaatattgtatcatagtgttgggatcattag------------tcaatgaaagactgtaaattttt 2934526  T
Q  235 tcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttatacca 291  Q
    |||||||||||||||||||| |||||||||||||||||||||||   ||||||||||    
T  2934525 tcaataacgaaaaagggaagctgattttcaagtaacattaaatcgtctgttatacca 2934469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 41 - 293
Target Start/End: Original strand, 2658958 - 2659210
Alignment:
Q  41 tttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaata 140  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||  ||| |||||||||||| || |    
T  2658958 tttcaataggaagttgcaaatgaaatatcctaatcagatcagtgaagtgcattatactaatatcaccattatcaaaaaacaagtttgatttattggaaga 2659057  T
Q  141 accaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttttcaata 240  Q
    |  |||||| | ||||||||||| |||||||  |||||| | ||| |||||||||||||| || ||||||||  |||||||  ||||||||| |||||||    
T  2659058 ataaaaatatttaatagtgagttcaagaaaaccagggatcgtagtcttaggaacactagcatttgtagaactcgatgaaagtttgtaaatttcttcaata 2659157  T
Q  241 acgaaaaagggaagttgattttcaagtaacattaaatctgttgttataccatc 293  Q
    |||||||||||||| |||||||||||||||| |||||||  || |||||||||    
T  2659158 acgaaaaagggaagctgattttcaagtaacaataaatctaatgctataccatc 2659210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 39 - 280
Target Start/End: Complemental strand, 2974120 - 2973894
Alignment:
Q  39 actttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaa 138  Q
    ||||||||||||||||  ||||||||||||||||||||||||| |||||||| ||||||||||||||   ||||||||| ||||||||| ||||||| ||    
T  2974120 actttcaataggatgtttcaaatgaaatatcctaatcagatcattgaagtgcattatactaatatcattgttatcaaaacccaattttggtttattgaaa 2974021  T
Q  139 taaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttttcaa 238  Q
     |   ||| |||  |||||||||||||||||||||| ||||   ||||||||||||               | | ||||||| |||||||||||||||||    
T  2974020 cattgaaagtaagcaatagtgagtttaagaaaagaatggatcatagtgttaggaac---------------agtcaatgaaatactgtaaattttttcaa 2973936  T
Q  239 taacgaaaaagggaagttgattttcaagtaacattaaatctg 280  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  2973935 taacgaaaaagggaagctgattttcaagtaacaataaatctg 2973894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 176
Target Start/End: Complemental strand, 2982977 - 2982839
Alignment:
Q  38 gactttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgta 137  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||  |    
T  2982977 gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccattatcaaaagacaattttgatttattcaa 2982878  T
Q  138 ataaccaaaataatgaatagtgagtttaagaaaagaagg 176  Q
     |    ||| ||||| |||||||||| ||||||||||||    
T  2982877 ttttttaaagtaatggatagtgagttcaagaaaagaagg 2982839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 2937574 - 2937505
Alignment:
Q  38 gactttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacc 107  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2937574 gactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatcacc 2937505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 2982818 - 2982762
Alignment:
Q  215 atgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaaca 271  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2982818 atgaacgactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaca 2982762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 67 - 271
Target Start/End: Complemental strand, 49613527 - 49613323
Alignment:
Q  67 atcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtttaa 166  Q
    |||||||||||||||||||||||||||||||||| ||| || ||||||||| |||| ||||||| |||||||||  ||||||||| || | | |||| ||    
T  49613527 atcctaatcagatcagtgaagtgccttatactaaaatcgccattatcaaaacccaagtttgattgattgtaatatgcaaaataatcaaaactaagttcaa 49613428  T
Q  167 gaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaag 266  Q
    ||||||||||||||  ||| || ||||||||||| || |||||| | ||||||||| ||||||||| || |||||| ||||| || | ||||||||||||    
T  49613427 gaaaagaagggattttagtcttgggaacactagcgttagtagaagtaaatgaaagattgtaaatttcttgaataacaaaaaatggcaattgattttcaag 49613328  T
Q  267 taaca 271  Q
    |||||    
T  49613327 taaca 49613323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 49618543 - 49618421
Alignment:
Q  27 tctacgcgtctgactttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaatccaatttt 126  Q
    ||||| || ||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  49618543 tctacccggctgcctttcaataggatgttccaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccgtcatcaaaatccaatttt 49618444  T
Q  127 gatttattgtaataaccaaaataat 151  Q
    |||||||  |||||| |||||||||    
T  49618443 gatttat--taataatcaaaataat 49618421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 269
Target Start/End: Complemental strand, 49618361 - 49618306
Alignment:
Q  214 aatgaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaa 269  Q
    ||||||||| ||||||| ||||||||||||||| ||||||| ||||||| ||||||    
T  49618361 aatgaaagaatgtaaatattttcaataacgaaatagggaagctgattttgaagtaa 49618306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 35204 - 35342
Alignment:
Q  36 ctgactttcaataggatgtggcaaatgaaatatcctaatcagatcagtgaagtgccttat--act-aatatcacccttatcaaaatccaattttgattta 132  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||| | ||| |   ||||||||| |||||||||||| |    
T  35204 ctgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatgcactgactatta---ttatcaaaaaccaattttgattga 35300  T
Q  133 ttgtaataaccaaaataatgaatagtgagtttaagaaaagaa 174  Q
    ||| ||||   |||||||| ||||||||||| ||||||||||    
T  35301 ttgaaatattgaaaataattaatagtgagttcaagaaaagaa 35342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 291
Target Start/End: Original strand, 35361 - 35435
Alignment:
Q  217 gaaagactgtaaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatctgttgttatacca 291  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| | ||||||||    
T  35361 gaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatcttatacca 35435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Complemental strand, 3339091 - 3339039
Alignment:
Q  239 taacgaaaaagggaagttgattttcaagtaacattaaatctgttgttatacca 291  Q
    |||||||||||||||| |||||||||||||||| |||||||| || |||||||    
T  3339091 taacgaaaaagggaagctgattttcaagtaacaataaatctgatgatatacca 3339039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 3339129 - 3339092
Alignment:
Q  42 ttcaataggatgtggcaaatgaaatatcctaatcagat 79  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  3339129 ttcaataggatgttgcaaatgaaatatcctaatcagat 3339092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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