View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_54 (Length: 309)
Name: NF20730_low_54
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 14598504 - 14598204
Alignment:
| Q |
1 |
cgcttgttatgtttcagatgatggaggagctctcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598504 |
cgcttgttatgtttcagatgatggaggagctctcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaa |
14598405 |
T |
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| Q |
101 |
cacaatattgagccaaggaatcctgattcttactttgcgttaaaaatggatccaaccaagaacaagagtaaactggatttcgtgaaggacagaagaaggg |
200 |
Q |
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| T |
14598404 |
cacaatattgagccaaggaatcctgattcttactttgcgttaaaaatcgatccaaccaagaacaagagtaaactggatttcgtgaaggacagaagaaggg |
14598305 |
T |
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| Q |
201 |
tgaaaagggagtacgatgagttcaaagtgcgcataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaagagaggaaatgatgat |
300 |
Q |
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| T |
14598304 |
tgaaaagggagtacgatgagttcaaagtgcgcataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaagagaggaaatgaagat |
14598205 |
T |
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| Q |
301 |
g |
301 |
Q |
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| |
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| T |
14598204 |
g |
14598204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 14609972 - 14610267
Alignment:
| Q |
1 |
cgcttgttatgtttcagatgatggaggagctctcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaa |
100 |
Q |
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| T |
14609972 |
cgcttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggctgcaagttttgctgatttatgggttcccttttgtcgcaaa |
14610071 |
T |
|
| Q |
101 |
cacaatattgagccaaggaatcctgattcttactttgcgttaaaaatggatccaaccaagaacaagagtaaactggatttcgtgaaggacagaagaaggg |
200 |
Q |
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| T |
14610072 |
cacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaaggatagaagaaggg |
14610171 |
T |
|
| Q |
201 |
tgaaaagggagtacgatgagttcaaagtgcgcataaatggccttcctgattctattaggagaagatctgatgcatttaatgcaagagaggaaatga |
296 |
Q |
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| T |
14610172 |
tgaagagggagtatgatgagttcaaggtgcgtataaatggccttccggagtcaattaggagaagatctgatgcatttaacgcaagggaggaaatga |
14610267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 41491889 - 41491819
Alignment:
| Q |
56 |
gaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctga |
126 |
Q |
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| T |
41491889 |
gaggcagcaagttttgctgatttgtgggttccattttgtcggaagcacaacattgacctaaggaaccctga |
41491819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 12194773 - 12194677
Alignment:
| Q |
40 |
ttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttacttt |
136 |
Q |
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|||||| || ||||| ||||| ||||||||||| || || |||||||| |||||||| || ||| | ||||| |||||||| || || ||||||||| |
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| T |
12194773 |
ttttgaggccatggccgaggcagcaagttttgcggagttgtgggttcctttttgtcggaagcacgacattgaaccaaggaacccggaatcttacttt |
12194677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 15419432 - 15419374
Alignment:
| Q |
77 |
ttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactt |
135 |
Q |
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| T |
15419432 |
ttatgggtaccattttgtcgaaaacacaatatcgaaccaaggaatccagatgcttactt |
15419374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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