View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_56 (Length: 306)

Name: NF20730_low_56
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_56
NF20730_low_56
[»] chr2 (4 HSPs)
chr2 (11-306)||(4568748-4569067)
chr2 (13-94)||(38576960-38577041)
chr2 (7-142)||(16863381-16863514)
chr2 (7-104)||(2248953-2249050)
[»] chr1 (5 HSPs)
chr1 (36-104)||(45136764-45136832)
chr1 (57-112)||(67712-67767)
chr1 (6-86)||(15321020-15321100)
chr1 (22-96)||(34601641-34601715)
chr1 (7-48)||(7749020-7749061)
[»] chr7 (2 HSPs)
chr7 (54-103)||(8448076-8448125)
chr7 (74-119)||(758029-758074)
[»] chr3 (2 HSPs)
chr3 (6-98)||(54437604-54437696)
chr3 (83-142)||(46303294-46303353)
[»] chr5 (1 HSPs)
chr5 (13-118)||(972776-972881)
[»] chr8 (1 HSPs)
chr8 (36-104)||(39280914-39280982)


Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 4569067 - 4568748
Alignment:
Q  11 atatgaagaaatttgatgttcttaggatgaaaataataactcg-ttataataatagagatgaagaaaatgagttttttctttgataggggtaaatcacct 109  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  4569067 atatgaagaaatttgatgtttttaggatgaaaataataactcggttataataatagagatgaagaaaatgagttttttctttgataggtataaatcacct 4568968  T
Q  110 ccaattcatccaagagtaatgtagaaaaaacctt-----------------caattggcgatatatttagggacaaagaataaatagtatttaaattta- 191  Q
    ||||||||||||||| ||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||     
T  4568967 ccaattcatccaagactaatgtagaaaaaaccttaatttttagaggttattcaattggcgatatatttagggacaaagaataaatagtatttaaatttaa 4568868  T
Q  192 -----cgtgatgacatgatgtctgctctaaccatggtaattgctactacagggtaaaggcctcaaaagtggaggataatgtgaaggtgaagtttgcatac 286  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4568867 atttacgtgatgacatgatgtctgctctaaccatggtaattgctactacagggtaaaggcctcaaaagtggaggataatgagaaggtgaagtttgcatac 4568768  T
Q  287 tcaatcaatatacgtagact 306  Q
    ||||||||||||||||||||    
T  4568767 tcaatcaatatacgtagact 4568748  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 38576960 - 38577041
Alignment:
Q  13 atgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgat 94  Q
    |||||||| ||| ||||||||  |||||||||  |||||  |||||| |||| | |||||||||||||| ||||||||||||    
T  38576960 atgaagaactttaatgttctttagatgaaaatggtaactgattataaaaataaatatgaagaaaatgagatttttctttgat 38577041  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 142
Target Start/End: Complemental strand, 16863514 - 16863381
Alignment:
Q  7 aagaatatgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaatca 106  Q
    ||||| |||||||||||||||||||||  |||||||||  |||||  || ||| |||| ||| |||||||| |   ||||||||||||| || ||||| |    
T  16863514 aagaagatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaataaaga-gaagaaaaaggaatttttctttgatatggataaatta 16863416  T
Q  107 cctccaattcatccaagagtaatgtagaaaaaacct 142  Q
    || |||||||||    | ||||||||||||||||||    
T  16863415 cc-ccaattcatggtggggtaatgtagaaaaaacct 16863381  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 2248953 - 2249050
Alignment:
Q  7 aagaatatgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaat 104  Q
    ||||| |||||||| ||| ||||| ||  |||||||||  |||||  || ||| |||| |||||||||||||  | |||||||||||||| |||||||    
T  2248953 aagaagatgaagaagtttaatgtttttgagatgaaaatggtaactaattctaagaataaagatgaagaaaatatgatttttctttgatagaggtaaat 2249050  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 45136764 - 45136832
Alignment:
Q  36 gatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaat 104  Q
    ||||||||||||||||  || ||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  45136764 gatgaaaataataactgattgtaagaataaagatgaagaaaatgagatttttctttgataggggtaaat 45136832  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 67767 - 67712
Alignment:
Q  57 taataatagagatgaagaaaatgagttttttctttgataggggtaaatcacctcca 112  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  67767 taataataaagatgaagaaaatgagtcttttctttgatagaggtaaattacctcca 67712  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 15321100 - 15321020
Alignment:
Q  6 gaagaatatgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttt 86  Q
    |||| ||||||| |||||| ||||| ||  || |||||| | |||||||| |||||||  |||||||||||||||||||||    
T  15321100 gaaggatatgaaaaaatttaatgtttttgagaagaaaatgacaactcgttgtaataattaagatgaagaaaatgagttttt 15321020  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 34601641 - 34601715
Alignment:
Q  22 tttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgatag 96  Q
    ||||||||| ||  ||||||||||||||||  |  ||| |||| |||||||||||||||| ||||||||| ||||    
T  34601641 tttgatgtttttgagatgaaaataataactaatcgtaagaataaagatgaagaaaatgagatttttcttttatag 34601715  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 7749061 - 7749020
Alignment:
Q  7 aagaatatgaagaaatttgatgttcttaggatgaaaataata 48  Q
    ||||| |||||||||||||||||||||  |||||||||||||    
T  7749061 aagaaaatgaagaaatttgatgttcttgagatgaaaataata 7749020  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 8448076 - 8448125
Alignment:
Q  54 ttataataatagagatgaagaaaatgagttttttctttgataggggtaaa 103  Q
    |||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  8448076 ttatcataataaagatgaagaaaatgagttttttctttgataggtgtaaa 8448125  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 758029 - 758074
Alignment:
Q  74 aaaatgagttttttctttgataggggtaaatcacctccaattcatc 119  Q
    |||||||| |||||||||||||||||||||| || | |||||||||    
T  758029 aaaatgagatttttctttgataggggtaaattacatgcaattcatc 758074  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 54437696 - 54437604
Alignment:
Q  6 gaagaatatgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggg 98  Q
    |||| |||||||||| ||| ||||| ||  |||||||||  ||| | ||| |||||||| |||||| |||||||||||||| |||||||||||    
T  54437696 gaaggatatgaagaagtttaatgttattgagatgaaaatggtaatttgttgtaataataaagatgaggaaaatgagtttttcctttgataggg 54437604  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 46303353 - 46303294
Alignment:
Q  83 tttttctttgataggggtaaatcacctccaattcatccaagagtaatgtagaaaaaacct 142  Q
    ||||||||||||||| |||||| ||  |||||||||| | || |||||||||||||||||    
T  46303353 tttttctttgataggagtaaattactcccaattcatcaaggaataatgtagaaaaaacct 46303294  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 972881 - 972776
Alignment:
Q  13 atgaagaaatttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaatcacctcca 112  Q
    |||||||| ||||||||||||  ||||||||| ||||||  || ||| |||| ||| ||| ||||||| |||||||||||| | || ||||| ||| |||    
T  972881 atgaagaagtttgatgttcttgagatgaaaatgataactaattttaaaaataaagaggaaaaaaatgaattttttctttgaaatggataaattaccccca 972782  T
Q  113 attcat 118  Q
    | ||||    
T  972781 aatcat 972776  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 39280982 - 39280914
Alignment:
Q  36 gatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaat 104  Q
    |||||||||  |||||  || ||| |||| |||||||||||| | | ||||||||||||||||||||||    
T  39280982 gatgaaaatggtaactgattttaagaataaagatgaagaaaaggggatttttctttgataggggtaaat 39280914  T

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