View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_57 (Length: 304)
Name: NF20730_low_57
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 44259681 - 44259981
Alignment:
| Q |
1 |
ttcatcgtaaatcttaagctcatttttatctgaaaatacatgttgtaggcttgtctgtagctagtatacgaatcttgtaatgggaggaaacataaacagt |
100 |
Q |
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| T |
44259681 |
ttcattgtaaatcttaagctcatttttatctgaaaatacatgttgtaggcttgtctgtagctagtatacgaatcttgtaatgggaggtaacataaacagt |
44259780 |
T |
|
| Q |
101 |
cagtttcatgtgttgtgttg-----gatacaccaggtgtaaataatatgtagattcccact--tttgtgttgttttttctttctttcttggcttagatat |
193 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44259781 |
cagtttcatgtgttgtgttgtgttggatacaccaggtgtaaataatatgtagattcccactattttgtgttgttttttctttctttcttggcttagatat |
44259880 |
T |
|
| Q |
194 |
ttcatacaacgtccaaatatgattagtgggtgattttgtgtatggcttaaaattgaataatgtaaaaatattgcatttttgtgcttttatcactgccttt |
293 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
44259881 |
ttcatacaacgtccaaatatgattagtgagtgatttagtgtatggcttaaaattgaataatgtaaaaatattgcatttttatgcttttatcacttccttt |
44259980 |
T |
|
| Q |
294 |
g |
294 |
Q |
| |
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| |
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| T |
44259981 |
g |
44259981 |
T |
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