View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_6 (Length: 693)
Name: NF20730_low_6
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 389 - 685
Target Start/End: Original strand, 4305680 - 4305976
Alignment:
| Q |
389 |
caaaacagtatgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtaca |
488 |
Q |
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| T |
4305680 |
caaaacagtatgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtgca |
4305779 |
T |
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| Q |
489 |
aacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgtttt |
588 |
Q |
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| T |
4305780 |
aacatgttcttttttctacttaacttaacaagttcattaattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgtttt |
4305879 |
T |
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| Q |
589 |
attacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
685 |
Q |
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| T |
4305880 |
attacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
4305976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4305293 - 4305526
Alignment:
| Q |
1 |
tcaattttattttgaaacttattttataagttccccaagagatattttgagatgaaaaggaaagaagggataacctttatctttttcgaaagtgatctag |
100 |
Q |
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| T |
4305293 |
tcaattttattttgaaacttattttataagttccccaagagatattttgagatgaaaaggaaagaagggataacctttatctttttcgaaagtgatctag |
4305392 |
T |
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| Q |
101 |
gcaaataaaataaataaaacgtgctgat-----atgggactaccaaaaagcaaaacaagtcattattcaattcaattcaattcaatgaatgatgtaacca |
195 |
Q |
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| T |
4305393 |
gcaaataaaataaataaaacgtgctgatatgggatgggactaccaaaaagcaaaacaagtcatt----------attcaattcaatgaatgatgcaacca |
4305482 |
T |
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| Q |
196 |
ctaacaatggatgtggacctcccaacaccgctagcagtttctgt |
239 |
Q |
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| T |
4305483 |
ctaacaatggatgtggacctcccaacaccgctagcagtttctgt |
4305526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 527 - 685
Target Start/End: Original strand, 4311172 - 4311333
Alignment:
| Q |
527 |
aattcataccagtagtatataacatggtcaatttgcattaagttaattgttaaagttgttt---tattacagtgtaatgaaggctaatattaagaaggaa |
623 |
Q |
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| T |
4311172 |
aattcatactagaagtatatagcatggtcaatttgcattaaattaattgttaatgttgtttaattattacagtgtaatgaaggctaatattaagaaggag |
4311271 |
T |
|
| Q |
624 |
gagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgatgt |
685 |
Q |
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| T |
4311272 |
gagcctagttgtgcacaaatgacaatcttttatgatgggaaagtaattgtgtttgatgatgt |
4311333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 544 - 683
Target Start/End: Original strand, 4300774 - 4300913
Alignment:
| Q |
544 |
tataacatggtcaatttgcattaagttaattgttaaagttgttttattacagtgtaatgaaggctaatattaagaaggaagagcctaaatgtgcacaaat |
643 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||| |
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| T |
4300774 |
tataacatggtcaatttgcattaaattaattgttaatgttgttttattacagtgtaatgaaggctaatattatcaaggaagagcctaaatgtacccaaat |
4300873 |
T |
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| Q |
644 |
gacaatcttgtatgatgggaaagtaattgtgtttgatgat |
683 |
Q |
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| T |
4300874 |
gacaattttttatgatgggaaaataattgtgtttgatgat |
4300913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 398 - 509
Target Start/End: Original strand, 4311019 - 4311130
Alignment:
| Q |
398 |
atgaatcatcacaacatgacacctatgaattttcaacaacttcctcatctcttcctacaagagattcctattttgggaaactccaggtacaaacatgttc |
497 |
Q |
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| T |
4311019 |
atgaatcatcacaatataacacctatgaattttcaacaatttcctcatctcttcctacaagagattcctattttgggaaactccaggtacatacatgttc |
4311118 |
T |
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| Q |
498 |
ttttttctactt |
509 |
Q |
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| T |
4311119 |
ttttttctactt |
4311130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 286 - 391
Target Start/End: Original strand, 4305549 - 4305652
Alignment:
| Q |
286 |
tcgtgtgtgtttttagctcctcacatgcataaatacaatatactatagtagtactagtaatagtataaagcttccaccgctctctcatcactctcacttt |
385 |
Q |
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| T |
4305549 |
tcgtgtgtgtttttagctcctcacatgcataaatacaatatacta--gtagtactagtaatagtataaagcttccaccgctctctcttcactctcacttt |
4305646 |
T |
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| Q |
386 |
cttcaa |
391 |
Q |
| |
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|||||| |
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| T |
4305647 |
cttcaa |
4305652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 4310618 - 4310779
Alignment:
| Q |
20 |
tattttataagttccccaagagatattttgagatgaaaaggaaagaagggataacctttatctttttcgaaagt-------------gatctaggcaaat |
106 |
Q |
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| T |
4310618 |
tattttatgagttccccaagagacattttgagatgaaaaggaaagaagggataaccttttagctttgcccaagtaacttgatcatttgatctaggcaaat |
4310717 |
T |
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| Q |
107 |
aaaataaataaaacgtgctgatatgggacta-ccaaaaagcaaaacaagtcattattcaatt |
167 |
Q |
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| T |
4310718 |
aaaataaataaaacgtgctgatatgggactacccaaaaaccaaaacaagtcattattcaatt |
4310779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 618 - 683
Target Start/End: Original strand, 4294311 - 4294376
Alignment:
| Q |
618 |
aaggaagagcctaaatgtgcacaaatgacaatcttgtatgatgggaaagtaattgtgtttgatgat |
683 |
Q |
| |
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||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
4294311 |
aaggaagagcctagatgtgcacaaatgacaattttttatgatgggaaagtaattgtgtttgatgat |
4294376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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