View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_61 (Length: 295)
Name: NF20730_low_61
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 47 - 281
Target Start/End: Original strand, 41319858 - 41320092
Alignment:
| Q |
47 |
taagccataccataggaaaagaaaatattctgtaaatgactttcagataaacttccaatgtaataaaattgattatgatcgtattttcttagaatcctaa |
146 |
Q |
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| T |
41319858 |
taagccataccataggaaaagaaaatattctgcaaatgactttcagataaacttccaatgtaataaaattgattatgatcgtattttcttagaatcctaa |
41319957 |
T |
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| Q |
147 |
tcaaattttcggtgacgaagacggtatcatcgtcacccatgacgaaccaccgtacatctttcattccgagccggagtgtttccgagacgattcgtgagat |
246 |
Q |
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| T |
41319958 |
tcaaattttcggtgacgaagacggtatcatcgtcacccatgacgaaccaccgtacatctttcattccgagccggagtgtttccgatacgattcgtgagat |
41320057 |
T |
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| Q |
247 |
tcggattgcggaacggtgaccttgtttgtttttat |
281 |
Q |
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| T |
41320058 |
tcggattgcggaacggtgaccttgtttgtttttat |
41320092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 11092085 - 11092000
Alignment:
| Q |
47 |
taagccataccataggaaaagaaaatattctgtaaatgactttcagataaacttccaatgtaataaaattgattatgatcgtattt |
132 |
Q |
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| T |
11092085 |
taagccatattataagaaaaataaatattctgcaaatgactctctgaattactaccaatgtaataaaattgattatgatcatattt |
11092000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 2619372 - 2619293
Alignment:
| Q |
47 |
taagccataccataggaaaagaaaatattctgtaaatgactttcagataaacttccaatgtaataaaattgattatgatc |
126 |
Q |
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|||||||||||||| ||||| | |||||||| |||||||| || |||||||| ||||| || ||||| || |||||||| |
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| T |
2619372 |
taagccataccataagaaaaatatatattctgcaaatgactctctgataaactcccaatatagtaaaactgcttatgatc |
2619293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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