View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_63 (Length: 289)
Name: NF20730_low_63
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 1743450 - 1743708
Alignment:
| Q |
18 |
catggaagatagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcact |
117 |
Q |
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| T |
1743450 |
catggaagacagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcact |
1743549 |
T |
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| Q |
118 |
accagatggctatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtg |
217 |
Q |
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||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1743550 |
accagatggctatcgcgaagagatccaacgttcgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtg |
1743649 |
T |
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| Q |
218 |
ttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatga |
276 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1743650 |
ttctttggttggaaagattaatcaaatcaaggtccaacccagattgtgaaatttgatga |
1743708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 2006932 - 2006674
Alignment:
| Q |
18 |
catggaagatagccttagtaatccaaaatcagatgcttgagaatccaaaggaaagctaatatcaagctcttcaagaaatgggaaacaataagctatcact |
117 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| |
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| T |
2006932 |
catggaagattaccttattaatccaaaatcagatgcttgagaatccaaaggaaagctaatgtcaagctcttcaagaaatggaaagcaataagctatcact |
2006833 |
T |
|
| Q |
118 |
accagatggctatcgcgaagagagccaatgtttgagcaaatcaaaaccctcaagtttatcatctttgtaccgagttctcgcaatccatcaacaggaagtg |
217 |
Q |
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| T |
2006832 |
accagatggctatcgcaaagagagccaatgtttgagcaaatcaaaaccctcaggtttatcatctttgaaccgagctctcgcaatccatcaacaggaactg |
2006733 |
T |
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| Q |
218 |
ttctttggttggaaagattaatcaaatctaggtccaacccagattgtgaaatttgatga |
276 |
Q |
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|||| |||||||||||||||| ||||| ||||||| |||||||||||||| ||||||| |
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| T |
2006732 |
ttctctggttggaaagattaacgaaatcaaggtccagcccagattgtgaaacttgatga |
2006674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 1749015 - 1749055
Alignment:
| Q |
191 |
gttctcgcaatccatcaacaggaagtgttctttggttggaa |
231 |
Q |
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| T |
1749015 |
gttctcgcaatccatcaaggggaagtgttctctggttggaa |
1749055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 44577603 - 44577567
Alignment:
| Q |
240 |
caaatctaggtccaacccagattgtgaaatttgatga |
276 |
Q |
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|||||| ||||||||||||| |||||||||||||||| |
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| T |
44577603 |
caaatcaaggtccaacccagtttgtgaaatttgatga |
44577567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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