View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_64 (Length: 288)
Name: NF20730_low_64
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_64 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 7 - 159
Target Start/End: Original strand, 43155165 - 43155314
Alignment:
| Q |
7 |
gttgaatgttttgatgagtggttgatgatgaagacggattaattaaatttgaatataatgctataaaagcaagaagtgtattgcagagaaggaacatgta |
106 |
Q |
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| T |
43155165 |
gttgaatgttttgatgagtggttgatga---agagggattgattaaatttgaatataatgctataaaagcaagaagtgtattgcagagaaggaacatgta |
43155261 |
T |
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| Q |
107 |
agtcttttcaatgatgtagctaaagaattgcataaggaatggattcaaggact |
159 |
Q |
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| T |
43155262 |
agtcttttcaatgatgtagctaaagaattgcataaggaatggattcaaggact |
43155314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 43167664 - 43167553
Alignment:
| Q |
11 |
aatgttttgatgagtggttgatgatgaagacggattaattaaatttgaatataatgctataaaagcaagaagtgtattgcagagaaggaacatgtaagtc |
110 |
Q |
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| T |
43167664 |
aatgttttgatgagtggttgatga---agagggattgattaaacttgaatataatgctataaaagcaagaatgatattgcaaagaaggaacatgtaactc |
43167568 |
T |
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| Q |
111 |
ttttcaatgatgtag |
125 |
Q |
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| T |
43167567 |
ttgtcaatggtgtag |
43167553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 43172294 - 43172369
Alignment:
| Q |
69 |
ataaaagcaagaagtgtattgcagagaaggaacatgtaagtcttttcaatgatgtagctaaagaattgcataagga |
144 |
Q |
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| T |
43172294 |
ataaaagcaagaagggcatttcagagagggaacatgtaactcttgtcaatgatgtagcttaagaattgcataagga |
43172369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 39843148 - 39843220
Alignment:
| Q |
90 |
cagagaaggaacatgtaagtcttttca---atgatgtagctaaagaattgcataaggaatggattcaaggact |
159 |
Q |
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| T |
39843148 |
cagagaatgaacatgtaagtcttttcattaatgatgtagctaaagaattgcataaggaatggattcaaggact |
39843220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 159
Target Start/End: Complemental strand, 47706246 - 47706174
Alignment:
| Q |
90 |
cagagaaggaacatgtaagtcttttca---atgatgtagctaaagaattgcataaggaatggattcaaggact |
159 |
Q |
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| T |
47706246 |
cagagaatgaacatgtaagtcttttcattaatgatgtagctaaagaattgcataaggaatggattcaaggact |
47706174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 45228193 - 45228268
Alignment:
| Q |
69 |
ataaaagcaagaagtgtattgcagagaaggaacatgtaagtcttttcaatgatgtagctaaagaattgcataagga |
144 |
Q |
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| T |
45228193 |
ataaaagcaagaagggcttttcagagagggaacatgtaactcttgtcgatgatgtagcttaagaattgcataagga |
45228268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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