View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_low_65 (Length: 274)

Name: NF20730_low_65
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_low_65
NF20730_low_65
[»] scaffold0005 (1 HSPs)
scaffold0005 (19-258)||(175135-175374)
[»] chr4 (7 HSPs)
chr4 (19-258)||(14641918-14642157)
chr4 (40-258)||(44743395-44743613)
chr4 (40-258)||(13090516-13090730)
chr4 (61-258)||(4527783-4527980)
chr4 (40-163)||(15210384-15210507)
chr4 (175-258)||(22590758-22590841)
chr4 (40-88)||(22590678-22590726)
[»] chr2 (1 HSPs)
chr2 (19-258)||(7231418-7231657)
[»] scaffold0020 (1 HSPs)
scaffold0020 (19-258)||(131844-132083)
[»] chr8 (1 HSPs)
chr8 (19-258)||(29565211-29565450)
[»] chr3 (5 HSPs)
chr3 (19-258)||(4575844-4576083)
chr3 (38-236)||(3590787-3590985)
chr3 (37-239)||(9786803-9787005)
chr3 (40-215)||(25705722-25705899)
chr3 (37-120)||(36331938-36332021)
[»] chr1 (3 HSPs)
chr1 (40-248)||(6578336-6578544)
chr1 (40-164)||(38835311-38835434)
chr1 (37-239)||(38317907-38318109)
[»] chr6 (1 HSPs)
chr6 (145-258)||(26333557-26333669)


Alignment Details
Target: scaffold0005 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 175374 - 175135
Alignment:
Q  19 gcagcagcaatcacttacgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactctta 118  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  175374 gcagcagcaatcgcttatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactctta 175275  T
Q  119 acactaggggtgaaagttataacatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  175274 acactaggggtgaaagttataacatgtttaggatggaatctcatgccatattgaaacttgaaaatttattggtgagtgaaagatggttacatccatctaa 175175  T
Q  219 agaaatgacatcattggaggcacttgttatgatcctttgg 258  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  175174 agaaatgacatcattggaggcacttgttatgttcctttgg 175135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 14641918 - 14642157
Alignment:
Q  19 gcagcagcaatcacttacgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactctta 118  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14641918 gcagcagcaatcgcttatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactctta 14642017  T
Q  119 acactaggggtgaaagttataacatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||    
T  14642018 acactaggggtgaaagttataacatgtttaggatggaatctcatgccatattgaaacttgaaaatttattggtgagtgaaagatggttacatccatctaa 14642117  T
Q  219 agaaatgacatcattggaggcacttgttatgatcctttgg 258  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  14642118 agaaatgacatcattggaggcacttgttatgttcctttgg 14642157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 40 - 258
Target Start/End: Original strand, 44743395 - 44743613
Alignment:
Q  40 tatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaagttata 139  Q
    ||||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    |||||||||||||    
T  44743395 tatcatatgaagtacttactaaagtaaggtaatagatttctttattctcatggatggacttgggttcgagaaactcttaacaccccaggtgaaagttata 44743494  T
Q  140 acatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaaagaaatgacatcattggaggc 239  Q
    | |||||||| |||||| |||||||  |||| || |||||||| ||||| ||||||||  |||||||||| ||||| || ||||||||||| ||||||||    
T  44743495 atatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaaatgacatccttggaggc 44743594  T
Q  240 acttgttatgatcctttgg 258  Q
    |||||||||| | ||||||    
T  44743595 acttgttatgtttctttgg 44743613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 40 - 258
Target Start/End: Original strand, 13090516 - 13090730
Alignment:
Q  40 tatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaagttata 139  Q
    ||||| |||||||||||  |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||     ||||||||||||    
T  13090516 tatcatatgaagtacttgctaaagcaaggtaatcgatttctttattctcatggatggacttgggttcgacaaactcttaacaccccatgtgaaagttata 13090615  T
Q  140 acatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaaagaaatgacatcattggaggc 239  Q
    | |||||||| |||||| |||||||  |||| || |||||||| ||||| ||||||||     ||||||| ||||| || ||||||||||| ||||||||    
T  13090616 atatgtttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaag----ggttacacccatcaaatgaaatgacatccttggaggc 13090711  T
Q  240 acttgttatgatcctttgg 258  Q
    |||||||||| | ||||||    
T  13090712 acttgttatgtttctttgg 13090730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 61 - 258
Target Start/End: Complemental strand, 4527980 - 4527783
Alignment:
Q  61 aagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaagttataacatgtttaggatggaatctc 160  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    ||||||||||| || |||||||| ||| || |||    
T  4527980 aagcaaggtaatagatttctttattctcatggatggacttgggttcgagaaattcttaacaccccaggtgaaagttacaatatgtttagaatgaaaactc 4527881  T
Q  161 atgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaaagaaatgacatcattggaggcacttgttatgatcctttgg 258  Q
    ||||  |||| || |||||||| || || ||||||||  ||||||| || ||||| || ||||||||||| || ||||||||||||||| | ||||||    
T  4527880 atgctgtattgaaacttgaaaagttgttagtgagtaagggatggttgcacccatcaaatgaaatgacatccttagaggcacttgttatgtttctttgg 4527783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 163
Target Start/End: Original strand, 15210384 - 15210507
Alignment:
Q  40 tatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaagttata 139  Q
    |||||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||    ||||||||||| |    
T  15210384 tatcacatgaagtacttactgaagcaagataatagatttctttattctcatggatggacttgggttcgagaaactcttaccaccccaggtgaaagttaca 15210483  T
Q  140 acatgtttaggatggaatctcatg 163  Q
    | |||||||  |||||| ||||||    
T  15210484 atatgtttaaaatggaaactcatg 15210507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 22590758 - 22590841
Alignment:
Q  175 cttgaaaatttattggtgagtaaaagatggttacatccatctaaagaaatgacatcattggaggcacttgttatgatcctttgg 258  Q
    |||||||| ||||| ||||||||  ||||||| || ||||| || ||||||||||| |||||||||||||||||| | ||||||    
T  22590758 cttgaaaagttattagtgagtaagggatggttgcacccatcaaacgaaatgacatccttggaggcacttgttatgtttctttgg 22590841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 22590678 - 22590726
Alignment:
Q  40 tatcacatgaagtacttaataaagcaaggtaatagatttctttattctc 88  Q
    ||||||||||| |||||| ||||  ||||||||||||||||||||||||    
T  22590678 tatcacatgaaatacttactaaaataaggtaatagatttctttattctc 22590726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 7231418 - 7231657
Alignment:
Q  19 gcagcagcaatcacttacgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactctta 118  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7231418 gcagcagcaatcgcttatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactctta 7231517  T
Q  119 acactaggggtgaaagttataacatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaa 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  7231518 acactagaggtgaaagttataacatgtttaggatggaatctcatgccatattgaaacttgaaaatttattggtgagtaaaagatggttacatccatctaa 7231617  T
Q  219 agaaatgacatcattggaggcacttgttatgatcctttgg 258  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  7231618 agaaatgacatcattggaggcacttgttatgttcctttgg 7231657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 131844 - 132083
Alignment:
Q  19 gcagcagcaatcacttacgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactctta 118  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  131844 gcagcagcaatcgcttatgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctagtggatggacttgggttcgagaaactctta 131943  T
Q  119 acactaggggtgaaagttataacatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||||| |||||||||||||||||||    
T  131944 acactaggggtgaaagttataacatgtttaggatggaatctcgtgccatattgaaacttgaaaattttttggtgagtaaaggatggttacatccatctaa 132043  T
Q  219 agaaatgacatcattggaggcacttgttatgatcctttgg 258  Q
    |||||||||||||||||||| | |||||||| ||||||||    
T  132044 agaaatgacatcattggaggtaattgttatgttcctttgg 132083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 29565211 - 29565450
Alignment:
Q  19 gcagcagcaatcacttacgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactctta 118  Q
    |||||||||||| |||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29565211 gcagcagcaatcgcttatgattataacatgaagtacttaataaagaaatgtaatagatttctttattctcgtggatggacttgggttcgagaaactctaa 29565310  T
Q  119 acactaggggtgaaagttataacatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaa 218  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||| |||||||||||||||    
T  29565311 acactagaagtgaaagttataacatgtttaggatggaatctcatgccatattgaaacttgaaaatttattggtgaataaaagatagttacatccatctaa 29565410  T
Q  219 agaaatgacatcattggaggcacttgttatgatcctttgg 258  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  29565411 agaaatgacatcattggaggcacttgttatgttcctttgg 29565450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 4576083 - 4575844
Alignment:
Q  19 gcagcagcaatcacttacgattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactctta 118  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||    
T  4576083 gcagcagtaatcgcttatgattatcacatgaagtacttaataaagcaaggtaatagatttcttgattctcgtggacagacttgggttcgagaaactctta 4575984  T
Q  119 acactaggggtgaaagttataacatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaa 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||    
T  4575983 acactaggggtgaaagttataatatgtttaggatggaatctcatgccatattgaaacttgaaaaattattggtgagtaaaggatggttacatccatctaa 4575884  T
Q  219 agaaatgacatcattggaggcacttgttatgatcctttgg 258  Q
    ||||||||||||||||||| ||||||||||| | ||||||    
T  4575883 agaaatgacatcattggagacacttgttatgtttctttgg 4575844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 3590787 - 3590985
Alignment:
Q  38 attatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaagtta 137  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||   || ||||||||    
T  3590787 attatcatatgaagtacttactaaagcaaggtaatagatttctttattcacatggatggaattgggttcgagaaactcttaacactccaggcgaaagtta 3590886  T
Q  138 taacatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaaagaaatgacatcattgga 236  Q
    |||||||||||||||||||||| ||||  |  | || |||||||| ||||| || |||||  ||||||||||||||||||| ||||||||||| |||||    
T  3590887 taacatgtttaggatggaatctaatgctgtgctgaaacttgaaaaattattagttagtaagggatggttacatccatctaatgaaatgacatcgttgga 3590985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 9787005 - 9786803
Alignment:
Q  37 gattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaagtt 136  Q
    |||||||| |||||||| ||| ||||||||||||| |||||||||||||| | |||||||| |||||||||||||||||||||||||   || |||||||    
T  9787005 gattatcatatgaagtatttactaaagcaaggtaacagatttctttattcacatggatggaattgggttcgagaaactcttaacactccaggcgaaagtt 9786906  T
Q  137 ataacatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaaagaaatgacatcattgga 236  Q
    ||||||||||||||||||||||| ||||  |  | || |||||||| ||||| || |||||  ||||||||||||||||||| ||||||||||| |||||    
T  9786905 ataacatgtttaggatggaatctaatgctgtgctgaaacttgaaaaattattagttagtaagggatggttacatccatctaatgaaatgacatcgttgga 9786806  T
Q  237 ggc 239  Q
    |||    
T  9786805 ggc 9786803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 215
Target Start/End: Original strand, 25705722 - 25705899
Alignment:
Q  40 tatcacatgaagtacttaat--aaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaagtta 137  Q
    |||||||||||||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    |||||||||||    
T  25705722 tatcacatgaagtacttactgaaaagcaaggtaatagatttctttattctcatggatggacttgggttcgagaaactcttaacaccccaggtgaaagtta 25705821  T
Q  138 taacatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatc 215  Q
     || |||||||| |||||| |||||||  |||| || |||||||| || || ||||| ||  ||||||| || |||||    
T  25705822 caatatgtttagaatggaaactcatgctgtattgaaacttgaaaagttgttagtgaggaagggatggttgcacccatc 25705899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 36331938 - 36332021
Alignment:
Q  37 gattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaac 120  Q
    |||||||| |||||||||||| |||| ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||    
T  36331938 gattatcatatgaagtacttactaaaacaaggtaatagatttttttattttcatggatggacttgggttcgagaaactcttaac 36332021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 40 - 248
Target Start/End: Complemental strand, 6578544 - 6578336
Alignment:
Q  40 tatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaagttata 139  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    |||||||||||||    
T  6578544 tatcatatgaagtacttaatgaagcaaggtaatagatttctttattctcatggatggaattgggttcgagaaactcttaacaccccaggtgaaagttata 6578445  T
Q  140 acatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaaagaaatgacatcattggaggc 239  Q
    | |||||||| |||||| ||||||   |||| || |||||||| ||||| || |||||  |||||||||| ||||| || ||||||||||  ||||||||    
T  6578444 atatgtttagaatggaaactcatgttgtattgaaacttgaaaagttattagtcagtaagggatggttacacccatcaaatgaaatgacattcttggaggc 6578345  T
Q  240 acttgttat 248  Q
    |||| ||||    
T  6578344 acttattat 6578336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 38835311 - 38835434
Alignment:
Q  40 tatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaagttata 139  Q
    ||||| || ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||  | | |||||||||||    
T  38835311 tatcatataaagtacttactaaagcaaggtaatagatttctttattctcatggatggacttggattcgagaaactcttaacac-cgagatgaaagttata 38835409  T
Q  140 acatgtttaggatggaatctcatgc 164  Q
    | |||||||| |||||| |||||||    
T  38835410 atatgtttagaatggaaactcatgc 38835434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 239
Target Start/End: Complemental strand, 38318109 - 38317907
Alignment:
Q  37 gattatcacatgaagtacttaataaagcaaggtaatagatttctttattctcgtggatggacttgggttcgagaaactcttaacactaggggtgaaagtt 136  Q
    |||||||| |||||||| |||  || ||||||||  | |||| ||||||| | || ||||| |||||||||||||| |||||||||    ||| ||||||    
T  38318109 gattatcatatgaagtatttaccaaggcaaggtagcaaatttatttattcacatgaatggaattgggttcgagaaattcttaacaccccaggtaaaagtt 38318010  T
Q  137 ataacatgtttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaaagaaatgacatcattgga 236  Q
    ||||||||||||||||| ||||| |||   | || || |||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||| |||||    
T  38318009 ataacatgtttaggatgaaatctaatgttgtgttgaaacttgaaaaattattagttagtaagagatggttacatccatccaaagaaatgacatcgttgga 38317910  T
Q  237 ggc 239  Q
    |||    
T  38317909 ggc 38317907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 26333669 - 26333557
Alignment:
Q  145 tttaggatggaatctcatgccatattcaatcttgaaaatttattggtgagtaaaagatggttacatccatctaaagaaatgacatcattggaggcacttg 244  Q
    ||||| |||||| |||||||  |||| || |||||||| ||||| ||||||||  |||||||||| ||||| || ||| ||||||| |||||||||||||    
T  26333669 tttagaatggaaactcatgctgtattgaaacttgaaaagttattagtgagtaagggatggttacacccatcaaatgaa-tgacatccttggaggcacttg 26333571  T
Q  245 ttatgatcctttgg 258  Q
    | ||| | ||||||    
T  26333570 taatgtttctttgg 26333557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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