View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_69 (Length: 266)
Name: NF20730_low_69
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 43439339 - 43439583
Alignment:
| Q |
10 |
aagaaaatactcatcacaatggactcacaattgaagaatattgcagtgaagaaaggagcaataatattaataataacaatggacaagtaattgattggaa |
109 |
Q |
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| T |
43439339 |
aagaaaatactcatcacaatggactcacaattgaagaatattgcagtgaagaaaggagcaataatattaataataacaatggacaagtaattgattggaa |
43439438 |
T |
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| Q |
110 |
aagcttggacaatttgttcactt---caaatcaatttacagatacagctaattacttttcaaatcaaaatagcatgccattgatgatacctcatagtcaa |
206 |
Q |
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| T |
43439439 |
aagcttggacaatttgttcacttcaacaaatcaatttacagatacagctaattacttttcaaatcaaaatagcatgccattgatgatacctcatagtcaa |
43439538 |
T |
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| Q |
207 |
catgagctacaatctcatcaaaatcaagctaatcatatcttaggt |
251 |
Q |
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| T |
43439539 |
catgagctacaatctcatcaaaatcaagctaatcatatcttaggt |
43439583 |
T |
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