View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_7 (Length: 674)
Name: NF20730_low_7
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 183 - 655
Target Start/End: Complemental strand, 1539776 - 1539308
Alignment:
| Q |
183 |
atcctaggtttgtgatatgacagtgatgaataattgtttttgtttacagtgtctatcgcccctgttggtgctgctactcctggtatgtttccttatgcca |
282 |
Q |
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| T |
1539776 |
atcctaggtttgtgacatgacagtgatgaataattgtttttgtttacagtgtctatcgcccctgttggtgctgctactcctggtatgtttccttatgcca |
1539677 |
T |
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| Q |
283 |
tttacaaatcattggttttgatattctgtattgaattttgttccaaattaaaaatggagtcatatatgcttgattcatatgataaagaggatcttagctt |
382 |
Q |
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| T |
1539676 |
tttacaaatcattggttttgatattctgtattgaattttgttccaaattaaaaatggagtcatatatgcttgattcatatgataaagaggatcttagctt |
1539577 |
T |
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| Q |
383 |
tacaacagtttttgcaagaatgagttaaaccgtaatataaaaatttaatatgatatcagattctatctattcagatcaaccaccaaattatagatacggt |
482 |
Q |
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| T |
1539576 |
tacaacagtttttgtaagaatgagttaaacggtaatataaaaatttaatatgatatcagattctatctattcagatcaaccaccaaattatagatacggt |
1539477 |
T |
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| Q |
483 |
atccaattttgctgtttttgagtcatatatatgttgttactccctattaacaatttaaatactcattcttttatacagttttaaatagattattgcaaat |
582 |
Q |
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| T |
1539476 |
atccaattttgctgtttttgagtc----atatgttgttactccctattaacaatttaaatactcattcttttatacagttttaaatagattattgcaaat |
1539381 |
T |
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| Q |
583 |
tgttgtgtccatattagtatgaatcaagacttttttatgtcaaaatataactccaaatatcaaatgttccaac |
655 |
Q |
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| T |
1539380 |
tgttgtgtccatattagtatgaatcaagacttttttatgtcaaaatataactccaaatgtcaaatgttccaac |
1539308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1539832 - 1539773
Alignment:
| Q |
1 |
tagtgtaatcacatgtctcggcgtcagtccgtgtgtctgacaccaggacacttctaatcc |
60 |
Q |
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| T |
1539832 |
tagtgtaatcacatgtctcggcgtcggtccgtgtgtctgacactgggacacttctaatcc |
1539773 |
T |
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