View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_70 (Length: 262)
Name: NF20730_low_70
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_70 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 33588662 - 33588404
Alignment:
| Q |
1 |
tgagactaggatagaagcaaggttgacgagtccaagaataacggcagaaagtaaagcaccattgtttcctaaacccacagattgaaagagatttggtgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
33588662 |
tgagactaggatagaagcaaggttgacgagtccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaa |
33588563 |
T |
|
| Q |
101 |
tagaaagcgacgatgttgatccccgtaaactgttgaaaaaatgggattgcaaatgccatgattaagtgaggtcgatattgtctctcgaatatggtcataa |
200 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
33588562 |
tagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctctaatatggtcataa |
33588463 |
T |
|
| Q |
201 |
atggctcttcttgcactgatttcgaaacttctgtccacttaatgagttcttctcactcg |
259 |
Q |
| |
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||||||||| |||||||| |||||||| |||||||||||||| |||||||||| ||||| |
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| T |
33588462 |
atggctcttgttgcactgctttcgaaatttctgtccacttaaagagttcttctaactcg |
33588404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 33595834 - 33595576
Alignment:
| Q |
1 |
tgagactaggatagaagcaaggttgacgagtccaagaataacggcagaaagtaaagcaccattgtttcctaaacccacagattgaaagagatttggtgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
33595834 |
tgagactaggatagaagcaaggttgacgagtccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaa |
33595735 |
T |
|
| Q |
101 |
tagaaagcgacgatgttgatccccgtaaactgttgaaaaaatgggattgcaaatgccatgattaagtgaggtcgatattgtctctcgaatatggtcataa |
200 |
Q |
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| T |
33595734 |
tagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataa |
33595635 |
T |
|
| Q |
201 |
atggctcttcttgcactgatttcgaaacttctgtccacttaatgagttcttctcactcg |
259 |
Q |
| |
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||||||||| |||||||| |||||||| |||||||||||||| |||||||||| ||||| |
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| T |
33595634 |
atggctcttgttgcactgctttcgaaatttctgtccacttaaagagttcttctaactcg |
33595576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 33602965 - 33602707
Alignment:
| Q |
1 |
tgagactaggatagaagcaaggttgacgagtccaagaataacggcagaaagtaaagcaccattgtttcctaaacccacagattgaaagagatttggtgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
33602965 |
tgagactaggatagaagcaaggttgacgagtccaagaataacggcagaaagtaaagcaccgttgtttcctaaacccacagattgaaagaggtttggtgaa |
33602866 |
T |
|
| Q |
101 |
tagaaagcgacgatgttgatccccgtaaactgttgaaaaaatgggattgcaaatgccatgattaagtgaggtcgatattgtctctcgaatatggtcataa |
200 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
33602865 |
tagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcgatattgtctctcaaatatggtcataa |
33602766 |
T |
|
| Q |
201 |
atggctcttcttgcactgatttcgaaacttctgtccacttaatgagttcttctcactcg |
259 |
Q |
| |
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||||||||| |||||||| |||||||| |||||||||||||| |||||||||| ||||| |
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| T |
33602765 |
atggctcttgttgcactgctttcgaaatttctgtccacttaaagagttcttctaactcg |
33602707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 259
Target Start/End: Complemental strand, 33618523 - 33618295
Alignment:
| Q |
31 |
tccaagaataacggcagaaagtaaagcaccattgtttcctaaacccacagattgaaagagatttggtgaatagaaagcgacgatgttgatccccgtaaac |
130 |
Q |
| |
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|||||| |||| ||| ||||||||||| || | || ||| ||||||||||| |||||||| || |||||||| || || || || |||||||| |||| | |
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| T |
33618523 |
tccaagtataatggcggaaagtaaagctccgtcgtgtccaaaacccacagagtgaaagaggttgggtgaataaaaggctacaatattgatccctgtaagc |
33618424 |
T |
|
| Q |
131 |
tgttgaaaaaatgggattgcaaatgccatgattaagtgaggtcgatattgtctctcgaatatggtcataaatggctcttcttgcactgatttcgaaactt |
230 |
Q |
| |
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||||| ||||| ||||||||||||||||| | |||||||||||||||| || | |||||||| |||| ||||||| |||||||||||||| || || |
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| T |
33618423 |
tgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcgatattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaattt |
33618324 |
T |
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| Q |
231 |
ctgtccacttaatgagttcttctcactcg |
259 |
Q |
| |
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|||||||||| || ||||||||| ||||| |
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| T |
33618323 |
ctgtccacttgataagttcttctaactcg |
33618295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 177
Target Start/End: Complemental strand, 33609305 - 33609202
Alignment:
| Q |
74 |
cccacagattgaaagagatttggtgaatagaaagcgacgatgttgatccccgtaaactgttgaaaaaatgggattgcaaatgccatgattaagtgaggtc |
173 |
Q |
| |
|
|||||||| || ||||| || ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| | |||||||||| |
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| T |
33609305 |
cccacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtc |
33609206 |
T |
|
| Q |
174 |
gata |
177 |
Q |
| |
|
|||| |
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| T |
33609205 |
gata |
33609202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 33627767 - 33627547
Alignment:
| Q |
2 |
gagactaggatagaagcaaggttgacgagtccaagaataacggcagaaagtaaagcaccattgtttcctaaacccacagattgaaagagatttggtgaat |
101 |
Q |
| |
|
||||| |||||||| |||||||| || | ||||| |||| ||||||||||||| | |||||| ||| || |||| |||| |||||| || ||||||| |
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| T |
33627767 |
gagacgaggatagatgcaaggttaacaacgccaagtataatcgcagaaagtaaagaagcattgtgtcccaaccccaaagatctaaagaggttaggtgaat |
33627668 |
T |
|
| Q |
102 |
agaaagcgacgatgttgatccccgtaaactgttgaaaaaatgggattgcaaatgccatgattaagtgaggtcgatattgtctctcgaatatggtcataaa |
201 |
Q |
| |
|
||||||| | ||||||||||| |||| ||||||||||| |||||||| | ||||| | |||||||||||||| | || | ||||||||| |||| |
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| T |
33627667 |
agaaagcaataatgttgatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttttgaatatggttttaaa |
33627568 |
T |
|
| Q |
202 |
tggctcttcttgcactgattt |
222 |
Q |
| |
|
||||||| ||||| |||||| |
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|
| T |
33627567 |
gggctcttgttgcagtgattt |
33627547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 209
Target Start/End: Complemental strand, 33563063 - 33562949
Alignment:
| Q |
95 |
ggtgaatagaaagcgacgatgttgatccccgtaaactgttgaaaaaatgggattgcaaatgccatgattaagtgaggtcgatattgtctctcgaatatgg |
194 |
Q |
| |
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|||| |||||| || || |||||||||||||| | |||||||||| || || |||| ||| || | ||||||||||||||||||||||| ||||||| |
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| T |
33563063 |
ggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatattgtctctccaatatgg |
33562964 |
T |
|
| Q |
195 |
tcataaatggctctt |
209 |
Q |
| |
|
||| ||| ||||||| |
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|
| T |
33562963 |
tcaaaaaaggctctt |
33562949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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