View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_low_74 (Length: 254)
Name: NF20730_low_74
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 8449061 - 8449280
Alignment:
| Q |
16 |
aatatcccggagtataaagagggaaagtcgtcaaaaagtgaatgacatatcgcactgtacggagcgaatatcaagcatacttccatttttaacgcaactt |
115 |
Q |
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| T |
8449061 |
aatatcctgaagtatacagagggaaagtcgtcaaaaagtgaatgacacatcgcattgtgcggagcgaatatcaagcatacttctatttttaacgcaactt |
8449160 |
T |
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| Q |
116 |
ttatcggtaaagttatttaaagttgatcattggtttaaagatttctttggctttctttaacagttcacatggtttcaaacttggattcatatgcatgtac |
215 |
Q |
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| T |
8449161 |
ttatcggtaaagttatttaaagttgatcattggtttaaagatttctttggctttctttaacagttcacacggtttcaaacttggatttatatgcatgtac |
8449260 |
T |
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| Q |
216 |
ttcgccatacatattcttcc |
235 |
Q |
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|||| ||||||||||||||| |
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| T |
8449261 |
ttcgtcatacatattcttcc |
8449280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 8237170 - 8237319
Alignment:
| Q |
75 |
cggagcgaatatcaagcatacttccatttttaacgcaacttttatcggtaaagttatttaaagttgatcattggtttaaagatttctttggctttcttta |
174 |
Q |
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| T |
8237170 |
cggagcgaataacgaacatacttccatttttacaacagtttttcttgatgaagtttcttaaaattgatcgttggtttaaagatttcttcagttttgttta |
8237269 |
T |
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| Q |
175 |
acagttcacatggtttcaaacttggattcatatgcatgtacttcgccata |
224 |
Q |
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| T |
8237270 |
accactcacgtggtttcaaacttggattcatatgcatgtacttcaccata |
8237319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 230
Target Start/End: Original strand, 8233974 - 8234145
Alignment:
| Q |
54 |
tgaatgacatatcgcactgtacggagcgaatatcaagcatacttccatttttaacgcaa---cttttatcggtaaagttatttaaagttgatcattggtt |
150 |
Q |
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| T |
8233974 |
tgaatgacataccgcattgtacggagcgaataatgaacatacttccatttttacaacaatcactttta---gtaaagttctataaagttgatcattg--- |
8234067 |
T |
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| Q |
151 |
taaagatttctttggctttctttaacagttcacatggtttcaaacttggattcatatgcatgtacttcgccatacatatt |
230 |
Q |
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| T |
8234068 |
--aagttttctttgatattctttaacctttcacatggtctcaaacttggattcatttgcatgtgcttcaccatacttatt |
8234145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 8244435 - 8244499
Alignment:
| Q |
149 |
tttaaagatttctttggctttctttaacagttcacatggtttcaaacttggattcatatgcatgta |
214 |
Q |
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| T |
8244435 |
tttaaagatttctttgattttcttttacc-ttcacatggtttcaaagttggattcatttgcatgta |
8244499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 214
Target Start/End: Original strand, 8243809 - 8243944
Alignment:
| Q |
79 |
gcgaatatcaagcatacttccatttttaacgcaacttttatcggtaaagttatttaaagttgat-cattggtttaaagatttctttggctttctttaaca |
177 |
Q |
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| T |
8243809 |
gcgaataacgagcatacttccatttttaaaacaatctctttcagtaaagttctatcaagttgattcttttttttaaagatttctttgattttctgttacc |
8243908 |
T |
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| Q |
178 |
gttcacatggtttcaaacttggattcatatgcatgta |
214 |
Q |
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| T |
8243909 |
-ttcacatggtttcaaagttggattcatttgcatgta |
8243944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 8245960 - 8246049
Alignment:
| Q |
135 |
aagttgatcattggtttaaagatttctttggctttctttaacagttcacatggtttcaaacttggattcatatgcatgtacttcgccata |
224 |
Q |
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| T |
8245960 |
aagttgatcatcgttgttaagatttctttagtgttctttaatcgctcacatggtatcaaatttggaatcatttgcatgtacttcaccata |
8246049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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